PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18710.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 267aa    MW: 29250.5 Da    PI: 10.3173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-18550147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+ lG+++W+ I++ ++ gR++k+c++rw + 
   Vang01g18710.1  5 KGPWSPEEDEALQRLVQALGPRNWTMISKSIP-GRSGKSCRLRWCNQ 50
                     79******************************.***********985 PP
2Myb_DNA-binding52.31.3e-1659101347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +v+a+ ++G++ W+tIar ++  Rt++ +k++w++ 
   Vang01g18710.1  59 AFTPEEDDVIVRAHSRFGNK-WATIARLLN-SRTDNAVKNHWNST 101
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.428155IPR017930Myb domain
SuperFamilySSF466895.99E-31298IPR009057Homeodomain-like
SMARTSM007171.6E-15453IPR001005SANT/Myb domain
PfamPF002495.1E-17550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-24658IPR009057Homeodomain-like
CDDcd001671.09E-14749No hitNo description
SMARTSM007171.1E-1356104IPR001005SANT/Myb domain
PROSITE profilePS5129419.91457106IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2259105IPR009057Homeodomain-like
CDDcd001678.57E-1159102No hitNo description
PfamPF002497.3E-1459101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDRIKGPWSP EEDEALQRLV QALGPRNWTM ISKSIPGRSG KSCRLRWCNQ LSPEVEHRAF  60
TPEEDDVIVR AHSRFGNKWA TIARLLNSRT DNAVKNHWNS TLKRKCSALG LDATDRSPLK  120
RSASVSAGYL NPSSPSGSDL SDPGKPALST PSASAFCRPN LMEAASSLSD PATSLSLCLP  180
GLNSESIQRS LCLPGPSPPP PPSAVSTVEE RRKQLFNPEF LRVMQEMIRK EVRSYMSGME  240
VKNGLRIQTE VIGKAVVKRM GISNIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-4041063105C-Myb DNA-Binding Domain
1msf_C2e-4041063105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g18710.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429109.11e-173PREDICTED: transcription factor MYB44-like
SwissprotO231608e-83MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0S3RPT20.0A0A0S3RPT2_PHAAN; Uncharacterized protein
STRINGXP_007160886.11e-153(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-79myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]