PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g19410.1

Common Name

LR48_Vigan01g330800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 204aa MW: 22598.3 Da PI: 11.4108

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g19410.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.8e-16	43	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W++eEd l +v+ +G+++W++I+ ++ gR++k+c++rw + Vang01g19410.1 43 RGTWSAEEDRVLTGLVEAHGPKNWALISLHVK-GRSGKSCRLRWCNQ 88 89***************************9.*********985 PP
2	Myb_DNA-binding	49.9	7.1e-16	97	137	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++Tt Ed ++++a+ +lG++ W++Iar ++ gRt++ +k++w+ Vang01g19410.1 97 PFTTREDAIILHAHDRLGNK-WAAIARLLP-GRTDNAVKNHWN 137 89****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.967	38	93	IPR017930	Myb domain
SMART	SM00717	2.8E-13	42	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.01E-29	42	136	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-15	43	88	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-22	44	96	IPR009057	Homeodomain-like
CDD	cd00167	6.76E-12	45	87	No hit	No description
SMART	SM00717	5.5E-13	94	142	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.576	95	144	IPR017930	Myb domain
Pfam	PF00249	2.1E-13	97	137	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-21	97	143	IPR009057	Homeodomain-like
CDD	cd00167	1.98E-9	97	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
LTQKSNPKSK MRRTKRCSSS SSSHSSESNP SNNHNSNNGV RVRGTWSAEE DRVLTGLVEA 60 HGPKNWALIS LHVKGRSGKS CRLRWCNQLS PTVEHRPFTT REDAIILHAH DRLGNKWAAI 120 ARLLPGRTDN AVKNHWNATL KRRASQRRRF GDDPLTALTL APPGSGGGGW TGGFRDVVAR 180 EVREYVSFSF SDKLGSNEKL SKY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-39	42	144	3	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	2e-38	42	144	57	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-38	42	144	57	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	4e-39	42	144	3	105	C-Myb DNA-Binding Domain
1msf_C	4e-39	42	144	3	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g19410.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017433979.1	1e-140	PREDICTED: transcription factor MYB44-like
Swissprot	O23160	1e-47	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A0L9TTL0	1e-139	A0A0L9TTL0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RQ43	1e-139	A0A0S3RQ43_PHAAN; Uncharacterized protein
STRING	GLYMA17G36370.2	4e-83	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5074	32	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	2e-50	myb domain protein 70

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]