PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang01g19410.2

Common Name

LR48_Vigan01g330800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 194aa MW: 21486 Da PI: 11.3304

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang01g19410.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.1e-16	33	78	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W++eEd l +v+ +G+++W++I+ ++ gR++k+c++rw + Vang01g19410.2 33 RGTWSAEEDRVLTGLVEAHGPKNWALISLHVK-GRSGKSCRLRWCNQ 78 89***************************9.*********985 PP
2	Myb_DNA-binding	50.1	6.5e-16	87	127	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++Tt Ed ++++a+ +lG++ W++Iar ++ gRt++ +k++w+ Vang01g19410.2 87 PFTTREDAIILHAHDRLGNK-WAAIARLLP-GRTDNAVKNHWN 127 89****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.967	28	83	IPR017930	Myb domain
SuperFamily	SSF46689	8.99E-30	32	126	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-13	32	81	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-15	33	78	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-22	34	86	IPR009057	Homeodomain-like
CDD	cd00167	6.23E-12	35	77	No hit	No description
SMART	SM00717	5.5E-13	84	132	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.576	85	134	IPR017930	Myb domain
Pfam	PF00249	1.9E-13	87	127	IPR001005	SANT/Myb domain
CDD	cd00167	1.75E-9	87	130	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-21	87	133	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MRRTKRCSSS SSSHSSESNP SNNHNSNNGV RVRGTWSAEE DRVLTGLVEA HGPKNWALIS 60 LHVKGRSGKS CRLRWCNQLS PTVEHRPFTT REDAIILHAH DRLGNKWAAI ARLLPGRTDN 120 AVKNHWNATL KRRASQRRRF GDDPLTALTL APPGSGGGGW TGGFRDVVAR EVREYVSFSF 180 SDKLGSNEKL SKY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-39	32	134	3	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	1e-38	32	134	57	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-38	32	134	57	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-39	32	134	3	105	C-Myb DNA-Binding Domain
1msf_C	3e-39	32	134	3	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang01g19410.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017433979.1	1e-140	PREDICTED: transcription factor MYB44-like
Swissprot	O23160	8e-48	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A0L9TTL0	1e-139	A0A0L9TTL0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RQ43	1e-139	A0A0S3RQ43_PHAAN; Uncharacterized protein
STRING	GLYMA17G36370.2	1e-82	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	1e-50	myb domain protein 70

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]