PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g19410.3
Common NameLR48_Vigan01g330800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 151aa    MW: 16712 Da    PI: 11.1924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g19410.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.5e-114351547
                     HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +v+ +G+++W++I+ ++  gR++k+c++rw + 
   Vang01g19410.3  4 LVEAHGPKNWALISLHVK-GRSGKSCRLRWCNQ 35
                     799**************9.***********985 PP
2Myb_DNA-binding50.74.1e-164484345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++Tt Ed ++++a+ +lG++ W++Iar ++ gRt++ +k++w+
   Vang01g19410.3 44 PFTTREDAIILHAHDRLGNK-WAAIARLLP-GRTDNAVKNHWN 84
                     89******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-17143IPR009057Homeodomain-like
PROSITE profilePS5129414.357136IPR017930Myb domain
CDDcd001672.89E-8434No hitNo description
PfamPF002493.2E-10435IPR001005SANT/Myb domain
SuperFamilySSF466892.88E-241691IPR009057Homeodomain-like
PROSITE profilePS5129421.9563791IPR017930Myb domain
SMARTSM007175.5E-134189IPR001005SANT/Myb domain
CDDcd001674.24E-104487No hitNo description
Gene3DG3DSA:1.10.10.602.7E-214490IPR009057Homeodomain-like
PfamPF002491.2E-134484IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
LTGLVEAHGP KNWALISLHV KGRSGKSCRL RWCNQLSPTV EHRPFTTRED AIILHAHDRL  60
GNKWAAIARL LPGRTDNAVK NHWNATLKRR ASQRRRFGDD PLTALTLAPP GSGGGGWTGG  120
FRDVVAREVR EYVSFSFSDK LGSNEKLSKY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-3519115105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-3419169159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-3419169159MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-3519115105C-Myb DNA-Binding Domain
1msf_C9e-3519115105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g19410.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433979.11e-108PREDICTED: transcription factor MYB44-like
SwissprotO231607e-42MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0L9TTL01e-106A0A0L9TTL0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RQ431e-106A0A0S3RQ43_PHAAN; Uncharacterized protein
STRINGGLYMA17G36370.22e-75(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.19e-45myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]