PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0203s00300.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 229aa    MW: 25152.9 Da    PI: 11.2517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0203s00300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.2e-05207229426
                       HHHHHHHHHHHHHHHHHHHHHCT CS
               HLH   4 ahnerErrRRdriNsafeeLrel 26 
                       +h+ +Er RR++iN ++  L+el
  Vang0203s00300.1 207 SHSLAERARREKINARMKLLQEL 229
                       8******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.106.9E-2310129IPR032675Leucine-rich repeat domain, L domain-like
PfamPF082638.6E-51643IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SuperFamilySSF520586.43E-2017130IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5088810.08203229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-4206229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTTTLVAAAD DAVMSNFLKS LKPPPPGWSQ TTSFCQWKGI QCDSSNRVTS ISLASKSLTG  60
TLPSDLNSLS QLRSLSLQDN ALSGPLPSLA QLSFLQTAYL NRNNFSAVPF AAFASLNSLQ  120
TLSLASNPFP HRSHLLHQPN RPRPRLCFPL CPCLLVKTQR RRGGMSALGR VRGSLKKSKS  180
VADETSVDSE KLPYVHVRVR RGQATDSHSL AERARREKIN ARMKLLQEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hq1_A5e-21912927147Probable receptor protein kinase TMK1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in auxin signal transduction and cell expansion and proliferation regulation (PubMed:23613767). May be involved in brassinosteroid-mediated plant growth and development via auxin regulation (PubMed:23921992). May be involved in microspore and pollen development (PubMed:23921992). {ECO:0000269|PubMed:23613767, ECO:0000269|PubMed:23921992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0203s00300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Initially up-regulated by exogenous auxin or brassinosteroid but down-regulated after a prolonged treatment. Down-regulated by abscisic acid, gibberellic acid or cytokinin. {ECO:0000269|PubMed:23921992}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413506.11e-74PREDICTED: receptor-like kinase TMK4
SwissprotQ9LK431e-31TMK4_ARATH; Receptor-like kinase TMK4
TrEMBLA0A0L9VIH31e-101A0A0L9VIH3_PHAAN; Uncharacterized protein
STRINGGLYMA05G28350.15e-56(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.22e-21bHLH family protein
Publications ? help Back to Top
  1. Diévart A,Clark SE
    Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases.
    Curr. Opin. Plant Biol., 2003. 6(5): p. 507-16
    [PMID:12972053]
  2. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]
  3. Gou X, et al.
    Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana.
    BMC Genomics, 2010. 11: p. 19
    [PMID:20064227]
  4. Dai N,Wang W,Patterson SE,Bleecker AB
    The TMK subfamily of receptor-like kinases in Arabidopsis display an essential role in growth and a reduced sensitivity to auxin.
    PLoS ONE, 2013. 8(4): p. e60990
    [PMID:23613767]
  5. Kim MH, et al.
    Identification of Arabidopsis BAK1-associating receptor-like kinase 1 (BARK1) and characterization of its gene expression and brassinosteroid-regulated root phenotypes.
    Plant Cell Physiol., 2013. 54(10): p. 1620-34
    [PMID:23921992]
  6. Xu T, et al.
    Cell surface ABP1-TMK auxin-sensing complex activates ROP GTPase signaling.
    Science, 2014. 343(6174): p. 1025-8
    [PMID:24578577]