PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0205s00090.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 197aa    MW: 22239.9 Da    PI: 8.7282
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0205s00090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.11.8e-4174150278
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       Cq+e C adl+ ak+yhrrhkvCe hskap v+v+g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++a
  Vang0205s00090.1  74 CQAEMCGADLTVAKRYHRRHKVCELHSKAPFVMVAGMRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNA 150
                       **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.3E-3567135IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.0671148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.41E-3872152IPR004333Transcription factor, SBP-box
PfamPF031106.3E-3274147IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
LSKLIMEIKS RDRRQVSIEK VRRDSPVEVE EEEEEEDESV AGVEGCLAED ERKKGGAGGG  60
RRGSTGGGVS PPSCQAEMCG ADLTVAKRYH RRHKVCELHS KAPFVMVAGM RQRFCQQCSR  120
FHELAEFDEA KRSCRRRLAR HNERRRKSNA ETCNEGCSSS SKGQQPTESL CRNADDWGRI  180
QMNMARNSGY RSFHFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3260147184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0205s00090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425485.11e-142PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ387411e-39SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A0S3SIC61e-141A0A0S3SIC6_PHAAN; Uncharacterized protein
STRINGXP_007149482.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-28squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]