PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0216s00420.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 374aa    MW: 41765.1 Da    PI: 8.3955
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0216s00420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-18120165147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg W + Ed++l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Vang0216s00420.1 120 RGHWRPAEDDKLKELVAQYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 165
                       899*****************************.***********996 PP
2Myb_DNA-binding49.59.5e-16175216447
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       + +eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+  
  Vang0216s00420.1 175 FCEEEEERLLTAHKMYGSK-WAMIARLFP-GRTDNAVKNHWHVM 216
                       558****************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.944115170IPR017930Myb domain
SMARTSM007172.1E-15119168IPR001005SANT/Myb domain
PfamPF002494.1E-17120165IPR001005SANT/Myb domain
SuperFamilySSF466897.86E-28120213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-25121173IPR009057Homeodomain-like
CDDcd001679.01E-14123164No hitNo description
SMARTSM007173.4E-12171219IPR001005SANT/Myb domain
PROSITE profilePS5129419.227171221IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-19174220IPR009057Homeodomain-like
PfamPF002491.3E-12175215IPR001005SANT/Myb domain
CDDcd001676.14E-7183217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
LLVFCFCFLF SVFVSMDSSS WYFNNVVGEG FNGVMSFIPS FHVRSQAPPL GHGKGVLGPN  60
LEMGLQMLSP SMVQQQESRG KKRTSDEGVT NKNLSLKREE EEEANGSISG KNGFTKLCAR  120
GHWRPAEDDK LKELVAQYGP QNWNLIAEHL EGRSGKSCRL RWFNQLDPKI NKKCFCEEEE  180
ERLLTAHKMY GSKWAMIARL FPGRTDNAVK NHWHVMMSRR QREREQSSGV YRRRKPLINE  240
PLPKGLNLTL SNNATSDEST ISNTIDESAS TCTNLSLTPS SAKFTPFGLL HQPGESREDV  300
WLKKYFGGWK GSEGVVGKRV MGVEQCSFSD ANSEVSVSES GVTNRSNLSI SQEKESDKIN  360
NISFIDFLGV GAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-331202207107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0216s00420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417459.10.0PREDICTED: myb-related protein B
TrEMBLA0A0S3RWM40.0A0A0S3RWM4_PHAAN; Uncharacterized protein
STRINGXP_007161897.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.12e-65myb domain protein 56