PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0238s00220.1
Common NameLR48_Vigan11g021500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 242aa    MW: 27618.4 Da    PI: 4.9847
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0238s00220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61.1e-183687556
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      ++f+++q++ Le++Fe ++ +  +++ +LA+ lgL+ rqV +WFqN+Ra++k
  Vang0238s00220.1 36 RRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWK 87
                      48*************************************************9 PP
2HD-ZIP_I/II1192.6e-3835125393
       HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                        rr+s++q+k+LE++Fe+e++Lep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE+dy  L+++y++l+++ e+L+ke+++L  +l++
  Vang0238s00220.1  35 TRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQK 125
                       79***********************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-181491IPR009057Homeodomain-like
PROSITE profilePS5007117.0862989IPR001356Homeobox domain
SMARTSM003891.9E-153293IPR001356Homeobox domain
PfamPF000464.4E-163687IPR001356Homeobox domain
CDDcd000861.45E-133690No hitNo description
Gene3DG3DSA:1.10.10.608.3E-193696IPR009057Homeodomain-like
PRINTSPR000311.8E-56069IPR000047Helix-turn-helix motif
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PRINTSPR000311.8E-56985IPR000047Helix-turn-helix motif
PfamPF021831.7E-1689131IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEYTYSAEGA EAETYTSSST TPSSGIRSKK KSNNTRRFSD DQIKSLETMF ETESRLEPRK  60
KLQLARDLGL QPRQVAIWFQ NKRARWKSKQ LERDYGILQS NYNSLASRFE ALKKEKQTLL  120
IQLQKLNHLM QKPLEAGQSR TQVEAANRMD SESENGGTMK CELEEKPSPS IERSEHAHGV  180
LSDDDASIKV EHFGLEDEHG LLNFAEHADD SLTSPEDWSA FESDGLLGQT TSDYQWWDFW  240
S*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0238s00220.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311750.0KT031175.1 Glycine max clone HN_WYQ_3 homeodomain/HOMEOBOX transcription factor (Glyma07g05800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441838.11e-179PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468971e-64ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A0L9VQF41e-178A0A0L9VQF4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SZ301e-178A0A0S3SZ30_PHAAN; Uncharacterized protein
STRINGXP_007135294.11e-150(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-66homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]