PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0248s00130.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25569.1 Da    PI: 5.1518
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0248s00130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.81.2e-077331844
                      HHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF 18 ngilKKAeELSvLCdaevaviifsstg 44
                      +g+ KK +E+ +LC++e++ ii+ +++
  Vang0248s00130.1  7 QGLVKKINEINILCGIEACAIIYTPDN 33
                      69*********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.6E-6733IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-11775IPR002100Transcription factor, MADS-box
CDDcd002663.96E-15764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MIPRLCQGLV KKINEINILC GIEACAIIYT PDNPQPEVWP SDRAVQSVLS RLRTVSELEK  60
GKKRLCQESF LRQRIIKAQA QLRKLRNEIR KKEVTLLMFQ YLNANNNFDN SRMIDLNDIS  120
NLIDQNLEKI ENNISISQAH KVKPIAENGG ETMSSLVNSV IHVEAMQHDN FSMDLNNGYG  180
DEIKPLAEVD EPSKYGVVVM EDNFSAFQGF GNFTIEGTTF GFSNSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0248s00130.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406812.11e-128PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0L9T7V11e-130A0A0L9T7V1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S8951e-130A0A0S3S895_PHAAN; Uncharacterized protein
STRINGXP_007146077.11e-105(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-32AGAMOUS-like 80