PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0255s00220.1
Common NameLR48_Vigan11g121000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 470aa    MW: 51912.9 Da    PI: 9.3929
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0255s00220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53e-183076148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT+eEd++++++v  +G+  W++Ia+ ++ gR +kqc++rw ++l
  Vang0255s00220.1 30 KGHWTKEEDDKIIELVSIHGPTKWSLIAQSLP-GRIGKQCRERWCNHL 76
                      789*****************************.*************96 PP
2Myb_DNA-binding475.8e-1582124145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +++WT eE++ l +a+  +G++ W+ Ia+ +  gRt++ +k++w+
  Vang0255s00220.1  82 KDPWTLEEELALMKAHCTHGNK-WAEIAKVLC-GRTDNAIKNHWN 124
                       689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-8536IPR009057Homeodomain-like
PROSITE profilePS5129430.9822580IPR017930Myb domain
SuperFamilySSF466892.36E-3027123IPR009057Homeodomain-like
SMARTSM007177.7E-172978IPR001005SANT/Myb domain
PfamPF002498.8E-183076IPR001005SANT/Myb domain
CDDcd001671.84E-153376No hitNo description
Gene3DG3DSA:1.10.10.601.1E-263783IPR009057Homeodomain-like
SMARTSM007171.5E-1381129IPR001005SANT/Myb domain
PROSITE profilePS5129419.48281131IPR017930Myb domain
PfamPF002492.7E-1382124IPR001005SANT/Myb domain
CDDcd001671.18E-1084124No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2184130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MLNPAEFFPD KSEVQCLHRW KKVLNPELVK GHWTKEEDDK IIELVSIHGP TKWSLIAQSL  60
PGRIGKQCRE RWCNHLSPDI KKDPWTLEEE LALMKAHCTH GNKWAEIAKV LCGRTDNAIK  120
NHWNGSLKKK KDFYLANGRL PPIPKSSMEV AVKDTVKHSI TNTIHVYSNK GLDATVASSS  180
KATDITKLGN SDKNQLESSG IVGEVGDSSS VPPKKCADSD CVHCNRLFHK GLRCSNLESG  240
SGDNFKINRG PKFVNPGLNA NQRIDHCLNY SDRNGDRSTR IFYSKESRTF GSFCHESSRL  300
DNPHPSESLN FNMSSGMQNE YISSPMKSSA GFVTPPHVKG IESCSESIES ILRKAAKTFP  360
TPSIIRKRRN GGELPATPRK LANAVNSHVC NEEVRTNDVS CSGVMGLSVS PASHGHGSNI  420
LQNNALNMTP LYRLGSKQTA VKSLTKQLDS AFYMEKSASV MEKSTERVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-54513033158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-54513033158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0255s00220.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441918.10.0PREDICTED: myb-like DNA-binding protein BAS1
RefseqXP_017441919.10.0PREDICTED: myb-like DNA-binding protein BAS1
TrEMBLA0A0L9VSW80.0A0A0L9VSW8_PHAAN; Uncharacterized protein
STRINGXP_007134020.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.16e-89myb domain protein 3r-3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]