PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0268s00320.1

Common Name

LR48_Vigan03g262300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 262aa MW: 28705.8 Da PI: 6.0669

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0268s00320.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	108	130	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Vang0268s00320.1 108 FSCNYCNRKFLSSQALGGHQNAH 130 89**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.88E-6	106	135	No hit	No description
PROSITE profile	PS50157	11.635	108	135	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	110	130	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MKQDFDLEVV ASAEYESEVS SQVASNISIQ ETCAGPCSDN LVNSPHVTKP IEFHLHSDAI 60 SLDLTLNFNN NDLVVTDSTG LSFSSTTSES NNDPPSQSTP SQTMPRVFSC NYCNRKFLSS 120 QALGGHQNAH KRERTLAKRA LRMGFFSERY VSLASLPLHG SFRSLGIKAH SSLHQGFSPT 180 MRPPEMKSSA RFEQGYVGFP IFLEEDEAEL LWQGSYHQVP SNGGHTHQNF TLSGTSNLSF 240 NGVNHPPVDI ENSAPELTLK L*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0268s00320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017416311.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_017416312.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_017416313.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_017416314.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_017416316.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_017416317.1	0.0	PREDICTED: zinc finger protein 4-like
Swissprot	Q39263	8e-43	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A0L9U947	0.0	A0A0L9U947_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RZX7	0.0	A0A0S3RZX7_PHAAN; Uncharacterized protein
STRING	XP_007163363.1	1e-160	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-44	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]