PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0272s00060.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 220aa    MW: 25293.7 Da    PI: 10.0022
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0272s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.65.3e-32321481128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lp GfrF+Ptd+el+ +yLkkk+ +++l++ +vi+ +d++++ePw Lp  +   +++ yfFs+  k       ++r++ sg Wk  gk+ke+ 
  Vang0272s00060.1  32 LPIGFRFRPTDQELLLHYLKKKAFSQQLPA-SVIPICDVFQSEPWLLPGDL---REKRYFFSNCGK------VNKRSAGSGCWKCVGKEKEIR 114
                       699***************************.99***************543...4578****9866......467999**************8 PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +  ++e++g+kkt++f kg++++  +t+Wvmhe rl
  Vang0272s00060.1 115 VCkNNEVIGMKKTMMFCKGSHET--RTRWVMHELRL 148
                       7548889**********888877..9*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-3826170IPR003441NAC domain
PROSITE profilePS5100536.93532170IPR003441NAC domain
PfamPF023652.0E-2133148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
LIESFFRLSV FSFVPKMEGL QEGFVVKGGI KLPIGFRFRP TDQELLLHYL KKKAFSQQLP  60
ASVIPICDVF QSEPWLLPGD LREKRYFFSN CGKVNKRSAG SGCWKCVGKE KEIRVCKNNE  120
VIGMKKTMMF CKGSHETRTR WVMHELRLLT SYPYHQMAVA DFAVYVIFQK RKKMTKASQK  180
RPFCSSKLQR VHDVEASIID FEMEFGHDNN VLPPPSSPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-21191482140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0272s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-129AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439126.11e-152PREDICTED: NAC domain-containing protein 83
TrEMBLA0A0L9VMI61e-151A0A0L9VMI6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T9I01e-151A0A0S3T9I0_PHAAN; Uncharacterized protein
STRINGXP_007151796.11e-111(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-40NAC domain containing protein 83