PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0273s00040.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 372aa    MW: 41999.2 Da    PI: 6.9058
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0273s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.83.8e-3279183199
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                       f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+ 
  Vang0273s00040.1  79 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGDl 171
                       89***************************966667889*************************************************665888 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                        + +l++ ++r+
  Vang0273s00040.1 172 YRHRLYIDWRRR 183
                       999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4270189IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-3075181IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-2677166No hitNo description
SMARTSM010191.6E-2479184IPR003340B3 DNA binding domain
PfamPF023621.4E-2979183IPR003340B3 DNA binding domain
PROSITE profilePS5086314.42479184IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
LKVGSVCNFM ELMQEVKGYS DSREEEEEEE TAEEIVTREE SSRSGGAASS VFGHHASGSS  60
SADGNVNNLQ QPSEKEHMFD KVVTPSDVGK LNRLVIPKQH AEKYFPLDSS ANEKGLLLNF  120
EDRNGKSWRF RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD IVSFQRGVGD LYRHRLYIDW  180
RRRPDHHHHH GPDPSATLFT PFFLPNQQHF IRWGATGRFY SLPSPNPPRH HDHLQQHLNY  240
NTMYHQHHHP FHHQLQGAAG AGGNGTHHYN NYHDMSSSGS GSVYYLRLFG VNMECASSTS  300
EDPNCFSLLS SSSMAHATMA NSNSPPSSSL PPLQLLREDS LSSPSSARFG DQRGEQPSML  360
FDLDPSLQYR Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-66731842114B3 domain-containing transcription factor NGA1
5os9_B8e-66731842114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0273s00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521558.11e-152B3 domain-containing transcription factor NGA1 isoform X2
SwissprotO827999e-70NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A1S3VT541e-150A0A1S3VT54_VIGRR; B3 domain-containing transcription factor NGA1 isoform X2
STRINGXP_007135337.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-62B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]