PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0278s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 232aa    MW: 25414.4 Da    PI: 5.6413
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0278s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC621.2e-196861898
             NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                      ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl d+v r
  Vang0278s00010.1  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSR 86
                      5789**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-26372IPR009072Histone-fold
SuperFamilySSF471131.22E-20496IPR009072Histone-fold
PfamPF008081.5E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK  60
TMNSLHLKHC VQSYNVFDFL RDVVSRVPDY GHGHGHAEAG ADDRAISKRR KAVGDDCNDS  120
DEEVKRSKMP SNQQSAIPSV AVDSGSESKD IPKEENVAAP VVSADSLRNI DLNAITNEND  180
DKKASVAEPP STEGKHEEIL GSGNGHKNNN VDVVYSKEEY FNPVAFCMES S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0278s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941550.0BT094155.1 Soybean clone JCVI-FLGm-18C10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408789.11e-137PREDICTED: dr1-associated corepressor-like
TrEMBLA0A0L9TCK21e-135A0A0L9TCK2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S9631e-135A0A0S3S963_PHAAN; Uncharacterized protein
STRINGGLYMA15G36170.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-68nuclear factor Y, subunit C11