PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0286s00030.1
Common NameLR48_Vigan11g050600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 915aa    MW: 101277 Da    PI: 6.601
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0286s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.6e-18329428198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  Vang0286s00030.1 329 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PE 419
                       89**************************555567778***************9989999999***9.********************876.77 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++l +++++
  Vang0286s00030.1 420 GKLIMGFRK 428
                       777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-29322437IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-18326429IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-21327428No hitNo description
PfamPF023621.6E-15329428IPR003340B3 DNA binding domain
SMARTSM010191.2E-19329429IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166329430IPR003340B3 DNA binding domain
PROSITE profilePS5105013.35594644IPR011124Zinc finger, CW-type
PfamPF074962.2E-10599641IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
LELKMESRSC MNVTCATLTT IRWRKGWALR SGEFADLCDK CGSAYEQSAY CDTFHSNDSG  60
WRECTSCDKR LHCGCIASMS QLELLDTGGV SCISCARNSG LQPIAINEKP NLSGTSKVID  120
ISAQQCTSLA NQLNVRGMQG GNYAENDGLR CWFKPHKIET DVPSTEMKPE ILPSVGELGS  180
TLISQFHFES NGSSKASKAE SCKADTEIRD IYESLAQTNL SMTLATPIGN SNPFHSSVVD  240
EREQSKTSSL LLGSRSRHLL PKPPRSSSGT GLEVNAGMVS QIRVARPPAE GRGRNQLLPR  300
YWPRITDQEL QQISGEYPTL SNSTIVPLFE KMLSASDAGR IGRLVLPKAC AEAYFPPISQ  360
PEGLPLRIQD VKGKEWMFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEG  420
KLIMGFRKAT NSTAIQETLP SNMPNGSHSS ETSYSGVYEN LPILSGYSGL LQSQKGCSET  480
HLNVLSKKWN SAGGDMNWHN IDIPESRKRE GLPLPPVLVP EKKRTRNIGS KSKRLLIDSQ  540
DALELKLTWE EAQDLLRPPP AVKPSIVMIE DQVFEEYEEP PVFGKRSIFV VRSAGVNEQW  600
TQCDSCSKWR KLPVDVLIPP KWTCVENLWD QSRSSCAAPN ELNPRELDNL LRLNKEFKKQ  660
RLAASQRPAL DHESSGLDAL ANAAILGDDA SDSGRTPVVT TTKHPRHRPG CSCIVCIQPP  720
SGKGKHKPTC TCNVCMTVKR RFKTLMMRKK KRQSEREAEI AQRNQLTWRT KDESEVDSTS  780
RHLTPVDGLE NEVRAPSELD PRTQDQVAEA AKGQLDLNCQ PDREEAQTGP NNVSMTSLLE  840
EANLPLETYL KQNGLTSLIS EQQTNSASNV QAQTTNESEG RQNEDCGTAS VIHEQDSSHE  900
DNSGQDKDQN NSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-673034362131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1738749KRRFKTLMMRKK
2738751KRRFKTLMMRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0286s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442385.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_017442386.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A0L9VRB40.0A0A0L9VRB4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SY260.0A0A0S3SY26_PHAAN; Uncharacterized protein
STRINGXP_007134718.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  4. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  5. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]