PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0295s00010.1
Common NameLR48_Vigan04g084400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 246aa    MW: 28471.6 Da    PI: 5.5535
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0295s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-193587456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +++f++eq++ Le  Fe ++++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  Vang0295s00010.1 35 KRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 87
                      568*************************************************9 PP
2HD-ZIP_I/II122.61.9e-3933125193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       e+krr+s+eq+++LE  Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+++ e+L+ke+e+L+ el++
  Vang0295s00010.1  33 ENKRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKESLQVELQK 125
                       58**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-19989IPR009057Homeodomain-like
SuperFamilySSF466892.91E-182489IPR009057Homeodomain-like
PROSITE profilePS5007117.5242989IPR001356Homeobox domain
SMARTSM003893.0E-163293IPR001356Homeobox domain
CDDcd000861.19E-133590No hitNo description
PfamPF000466.9E-173587IPR001356Homeobox domain
PRINTSPR000318.7E-66069IPR000047Helix-turn-helix motif
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PRINTSPR000318.7E-66985IPR000047Helix-turn-helix motif
PfamPF021838.8E-1289129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMEGDENIQA SKGKNDESFA SLEAPRKKNK KIENKRRFSD EQIRSLECIF ETESKLEPRK  60
KMQLARDLGL QPRQVAIWFQ NRRARWKSKR IEQEYRKLKD EYDNLASRFE SLKKEKESLQ  120
VELQKLSDLV VSSHDGGRED KSAKEHSIED GGSGSGYSSW KPEAKPRFSN EGLEERVGVY  180
SDDQNENSIM RSEKSEDKGH QLLRMDDNDH AEMPLASLEK WYSSVDPNGI LDQSCSSSQW  240
LDFWT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0295s00010.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935440.0BT093544.1 Soybean clone JCVI-FLGm-17O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420762.11e-179PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A0L9UD541e-178A0A0L9UD54_PHAAN; Uncharacterized protein
STRINGXP_007136490.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.16e-43homeobox 7
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]