PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g00260.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 202aa    MW: 22465.3 Da    PI: 5.6568
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g00260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed  l ++ +++G+  +W + +++ g++R++k+c++rw++yl
   Vang02g00260.1 14 KGPWSPDEDVTLRNYLEKHGTAgNWIALPKKAGLKRCGKSCRLRWLNYL 62
                     79******************99*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-20565IPR009057Homeodomain-like
PROSITE profilePS5129418.727966IPR017930Myb domain
SMARTSM007178.7E-111364IPR001005SANT/Myb domain
PfamPF002494.9E-141462IPR001005SANT/Myb domain
SuperFamilySSF466891.38E-171589IPR009057Homeodomain-like
CDDcd001676.54E-91662No hitNo description
PROSITE profilePS500904.2056396IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-56689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGRAPCCDKS IVKKGPWSPD EDVTLRNYLE KHGTAGNWIA LPKKAGLKRC GKSCRLRWLN  60
YLRPHIKLGG FTEEEDKIIC TLYGNIGSRQ KLNSAWFDSY NNLNLEQTPI SVPLPMPQEL  120
VSFNYSAPPS NEISLPTFNA ASLAQQNEDI QWFGYDYAEE NDPNLLAFVL DDLLMNHGSA  180
SSDHIASSCV ANQDSFYSSK A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g00260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152944.15e-92hypothetical protein PHAVU_004G173500g
TrEMBLV7C6D81e-90V7C6D8_PHAVU; Uncharacterized protein
STRINGXP_007152944.12e-91(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-49myb domain protein 36