PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g00490.1
Common NameLR48_Vigan10g003000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HRT-like
Protein Properties Length: 443aa    MW: 49555.2 Da    PI: 10.0913
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g00490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like54.61.8e-17267296130
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                     iCGv+l+dG +C+r+P+++R RC eHKGmR
  Vang02g00490.1 267 ICGVALGDGLFCRRPPAEKRLRCPEHKGMR 296
                     8****************************9 PP
2HRT-like59.36.1e-19332362131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCG+il+dGs+C+r+Pv+gRKRC+eHKG+Ri
  Vang02g00490.1 332 ICGIILNDGSTCRRKPVEGRKRCHEHKGRRI 362
                     8*****************************7 PP
3HRT-like61.71.1e-19403433131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCG+il+dGs C+rqPvkgRKRC+eHKG+Ri
  Vang02g00490.1 403 ICGIILDDGSACTRQPVKGRKRCHEHKGRRI 433
                     8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
LVMMALVNSR LKREQCNRTK HDSSFSHWKI LIGPSDWEDH SKGKEGCVRY RIHNLPQESN  60
PGVYELGIAV SNGGLGREIS KLTPHSHRIV VVYLGEADNV RTRLQCYGRT GDHLQSGCSN  120
GSSSQKGRPL FEEVFSQGLS IIYRWAPMQN KEDALRTEAQ LLSTFDYAWN TRSNGIRRPE  180
EILQKLQKIA SGTRTLSDVT KVLLPFTQKQ VGIRIKPSKL PQEDDKLDEA DNGSYNFLSR  240
VFSFNRSRPR IVQSTTGVVQ EQENAKICGV ALGDGLFCRR PPAEKRLRCP EHKGMRANVS  300
IAEATRVPKS ESNVSQKVVG SLGDESLTDT NICGIILNDG STCRRKPVEG RKRCHEHKGR  360
RIVASVQKRG NGYRYQNVSH VVEDSLQTLV GNPVDESILN TNICGIILDD GSACTRQPVK  420
GRKRCHEHKG RRIHASFHVN KK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g00490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438797.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A0L9VGN20.0A0A0L9VGN2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TCV00.0A0A0S3TCV0_PHAAN; Uncharacterized protein
STRINGXP_007152922.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-96effector of transcription2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]