PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g01940.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 1211aa    MW: 135103 Da    PI: 4.8139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g01940.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.5e-111061662785
                     ---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3  27 ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                     +++ +++++++++d+ g ++e+ l+     +  + yvl +GW +F++++gL +gD v ++  
  Vang02g01940.3 106 EEDVRKGIEVKVYDRGGHEFEMMLKKwvIDSN-QfYVLNRGWFSFCNEHGLGQGDLVALRAF 166
                     44556899****************66343444.35**********************98844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-11102184IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-12106179IPR015300DNA-binding pseudobarrel domain
PfamPF023627.7E-9108167IPR003340B3 DNA binding domain
CDDcd100174.77E-12110182No hitNo description
PROSITE profilePS508639.516114184IPR003340B3 DNA binding domain
SuperFamilySSF816063.92E-52251418IPR001932PPM-type phosphatase domain
Gene3DG3DSA:3.60.40.109.9E-67253554IPR001932PPM-type phosphatase domain
SMARTSM003324.9E-56259551IPR001932PPM-type phosphatase domain
PROSITE profilePS5174641.019263553IPR001932PPM-type phosphatase domain
CDDcd001434.76E-55279553No hitNo description
PfamPF004811.3E-33293532IPR001932PPM-type phosphatase domain
PROSITE patternPS010320299307IPR000222PPM-type phosphatase, divalent cation binding
SuperFamilySSF816063.92E-52450555IPR001932PPM-type phosphatase domain
Gene3DG3DSA:2.60.120.106.3E-30599722IPR014710RmlC-like jelly roll fold
SuperFamilySSF512063.27E-26600721IPR018490Cyclic nucleotide-binding-like
CDDcd000384.95E-21611720No hitNo description
SMARTSM001001.0E-12611734IPR000595Cyclic nucleotide-binding domain
PROSITE profilePS5004226.86611720IPR000595Cyclic nucleotide-binding domain
PfamPF000273.8E-20630721IPR000595Cyclic nucleotide-binding domain
PRINTSPR001031.3E-7632646No hitNo description
PRINTSPR001031.3E-7647661No hitNo description
PRINTSPR001031.3E-7682691No hitNo description
SuperFamilySSF512061.17E-14729787IPR018490Cyclic nucleotide-binding-like
Gene3DG3DSA:2.60.120.105.9E-16729866IPR014710RmlC-like jelly roll fold
PROSITE profilePS5004212.038737877IPR000595Cyclic nucleotide-binding domain
SMARTSM001004.9E-5737875IPR000595Cyclic nucleotide-binding domain
CDDcd000388.10E-9737861No hitNo description
SuperFamilySSF512061.17E-14814872IPR018490Cyclic nucleotide-binding-like
PRINTSPR001031.3E-7856868No hitNo description
SuperFamilySSF561122.31E-428831186IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.2E-78911004No hitNo description
PROSITE profilePS5001125.4188981152IPR000719Protein kinase domain
SMARTSM002202.2E-179061152IPR000719Protein kinase domain
PfamPF000695.4E-329181152IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.102.6E-4010051174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0006470Biological Processprotein dephosphorylation
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0004721Molecular Functionphosphoprotein phosphatase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1211 aa     Download sequence    Send to blast
MAGSSSNSGR AKSVVEGNKH AKEIQFNDEL HLEFILDAGI VKDCELSLPY GVQLTNDKWN  60
LFLPLLGFEE TLIGFLREEE NVRKGIEVKV YDKGCHEYEM MLLKEEEDVR KGIEVKVYDR  120
GGHEFEMMLK KWVIDSNQFY VLNRGWFSFC NEHGLGQGDL VALRAFRHSI TDMLCFVVTF  180
RRMRGSSING DPIARTTDVG EVANFSPTSS DVEEGEIRDQ LNQLSITRDS EAGIRRLARV  240
SAQFLPPDGS RIVKVPSENF ELRYSFLSQR GYYPDALDKA NQDSFCIHTP FGTSPNDHFF  300
GVFDGHGEFG AQCSQFVKRK LCENLLRNSK FRGDPVEACH AAFLATNSQL HADVLDDSMS  360
GTTAITVLVR GRTIFVANSG DSRAVIAERR GKEIVAVDLS IDQTPFRSDE LERVKLCGAR  420
VLTLDQIEGL KNPDVQCWGT EEGDDGDPPR LWVPNGMYPG TAFTRSIGDS IAETIGVVAN  480
PEIVVFELTQ DHPFFVLASD GVFEFLSSQS VVEMAAKFKD PRDACAAIVA ESYRLWLQYE  540
TRTDDITVII VHVNGLTAES TVAQSASYGD VLRKPVPQVV EVTGSESPST FGWSARNHRA  600
HIEQALHDHF LFRKLTDSQC HVLLDCMQRV EVEPGDIIVK QGGEGDCFYV VGSGEFEVLA  660
TQEEKEGDVP RVLQRYTAEK LSCFGELALM YNKPLQASVR AVTKGTLWAL KREDFRGILM  720
SEFSNLSSLK LLRSVDLLSR LSILQLSQIS DSLSEVSFSN GQTIIDNNEI LALYIIQKGC  780
VKITFDSDLL TSPNAYSLKP DIQNEENDVQ SRTELSIEKP EGSYFGEWTL YGERIGSINA  840
VAVGDVVCAL LTKDKFESVI GSIQKISQED HKSKDNSMEL TGRNYDFSSL DKVQLSDLEW  900
RKTLYSTDCS EIGVANLKES ENLLTLKRFS KPKIKRLGKE SQVLKEKDLI KGLGSSVSIP  960
QVLCTCADRM YAGILLNTHL ACPLSSILSS PFSESAARFC AASVVTALED LHKNGVLYRG  1020
VSPDVLMLEQ TGQIQLVDFR FGKQLSGERT FTICGMADSL APEIVLGKGH GFPADWWALG  1080
VLIYFMLRGE MPFGSWRENE LDTVAKIAKR KLHLPESFSS ETVDLISKLL EVEENNRLGS  1140
QGPDSVKSHP WFKGIDWEGI RSRTFPVPQE IISRITQYLE VHSEDCSTVY PGSPLQEVEE  1200
LNVPEWLENW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rdq_E2e-41883116828313cAMP-dependent protein kinase, alpha-catalytic subunit
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g01940.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439799.10.0PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1
SwissprotQ9SL760.0P2C19_ARATH; Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein
TrEMBLA0A4D6LVL40.0A0A4D6LVL4_VIGUN; Protein kinase A
STRINGXP_007152897.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.27e-10WRKY family protein
Publications ? help Back to Top
  1. Guan C,Rosen ES,Boonsirichai K,Poff KL,Masson PH
    The ARG1-LIKE2 gene of Arabidopsis functions in a gravity signal transduction pathway that is genetically distinct from the PGM pathway.
    Plant Physiol., 2003. 133(1): p. 100-12
    [PMID:12970478]
  2. Schweighofer A,Hirt H,Meskiene I
    Plant PP2C phosphatases: emerging functions in stress signaling.
    Trends Plant Sci., 2004. 9(5): p. 236-43
    [PMID:15130549]
  3. Xue T, et al.
    Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis.
    BMC Genomics, 2008. 9: p. 550
    [PMID:19021904]