PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g02420.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 229aa MW: 26302.7 Da PI: 5.1464

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g02420.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.8	1.8e-15	39	124	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+ +L+e+ ++ +l+r++l+ W ev++k+ +e + ers +qC++ +++l+++ykk+k+ + + s ++p+f++++ Vang02g02420.1 39 EWSEHETFVLLEVWGDKFLQLGRNSLRSEEWHEVAEKVsEELKTERSVTQCRSVLDKLKRKYKKEKTKMDEM-GMGSCKWPFFKKMD 124 5***********************************88899***********************97.666779*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.0E-20	38	126	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEDDARYPPK SFSLNRSYEF APRFKLSYGS RGSGSSGEEW SEHETFVLLE VWGDKFLQLG 60 RNSLRSEEWH EVAEKVSEEL KTERSVTQCR SVLDKLKRKY KKEKTKMDEM GMGSCKWPFF 120 KKMDMLMASS ARQEYGLACG VDSGDKRQQM MELEKMRLDF NRELELQKKQ ILERAQAEIA 180 KIQDGDEEET DTSTENLIDN PGKGGDILIE CTSFGGNIVY TLIKRSSQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g02420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003534187.1	2e-76	trihelix transcription factor ASIL2
Refseq	XP_028181929.1	2e-76	trihelix transcription factor ASIL2-like
TrEMBL	A0A445J306	5e-75	A0A445J306_GLYSO; Trihelix transcription factor ASIL1
TrEMBL	K7LER4	5e-75	K7LER4_SOYBN; Uncharacterized protein
STRING	GLYMA09G32130.2	9e-76	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-36	Trihelix family protein