PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g02820.1

Common Name

LR48_Vigan10g045200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 504aa MW: 54780 Da PI: 5.4071

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g02820.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	7e-17	83	127	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+ Vang02g02820.1 83 REKWTEEEHQKFLEALKLYGRG-WRQIEEHIG-TKTAVQIRSHAQKF 127 789*****************.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.26E-16	77	131	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.201	78	132	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-10	80	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-16	81	130	IPR006447	Myb domain, plants
SMART	SM00717	4.5E-13	82	130	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-14	83	126	IPR001005	SANT/Myb domain
CDD	cd00167	2.99E-11	85	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0046686	Biological Process	response to cadmium ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
LSLLAAGVSL CGGLGCFPRQ ADSHFAPMEM QDQIENTRST ISGSASNCHS NAGKQSENVA 60 HIPSVRNGHA PKVRKPYTIT KQREKWTEEE HQKFLEALKL YGRGWRQIEE HIGTKTAVQI 120 RSHAQKFFSK VVRESEGSAE SSIQPINIPP PRPKRKPLHP YPRKSVDAFR GHAIPNETET 180 SQSTNLLVAE KDTPSPTSVL STVGSEAFGS AFSEQNNRCL SPNSCTTDIH SVSLSPVEKE 240 NDCMTSKASE EEEKGSPASV PLSIVSDPNM CMKPEFSSKE TEYGIDDSAN MPQTTSIKLF 300 GRTVSMVDNQ KPQNIDDNGK AIITVKSDVV DDAGNEKLGQ STEQVDTQLS LGLVGGNCSI 360 TPDSDGADRS EEPPKENVCL SECVPDASFP QWSLYQGLPA FCVSPCNQIL NHMPLRPSLK 420 VRAREEESCC TGSNTESVCD MENQGKNSDA VDSKCEKYEG EGAAPQKPAR GFVPYKRCLA 480 ERDGTSLIAA LEERDGQRAR VCS*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

LSLLAAGVSL CGGLGCFPRQ ADSHFAPMEM QDQIENTRST ISGSASNCHS NAGKQSENVA  60
HIPSVRNGHA PKVRKPYTIT KQREKWTEEE HQKFLEALKL YGRGWRQIEE HIGTKTAVQI  120
RSHAQKFFSK VVRESEGSAE SSIQPINIPP PRPKRKPLHP YPRKSVDAFR GHAIPNETET  180
SQSTNLLVAE KDTPSPTSVL STVGSEAFGS AFSEQNNRCL SPNSCTTDIH SVSLSPVEKE  240
NDCMTSKASE EEEKGSPASV PLSIVSDPNM CMKPEFSSKE TEYGIDDSAN MPQTTSIKLF  300
GRTVSMVDNQ KPQNIDDNGK AIITVKSDVV DDAGNEKLGQ STEQVDTQLS LGLVGGNCSI  360
TPDSDGADRS EEPPKENVCL SECVPDASFP QWSLYQGLPA FCVSPCNQIL NHMPLRPSLK  420
VRAREEESCC TGSNTESVCD MENQGKNSDA VDSKCEKYEG EGAAPQKPAR GFVPYKRCLA  480
ERDGTSLIAA LEERDGQRAR VCS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00146	DAP	Transfer from AT1G18330	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g02820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439841.1	0.0	PREDICTED: protein REVEILLE 7-like
Refseq	XP_017439842.1	0.0	PREDICTED: protein REVEILLE 7-like
TrEMBL	A0A0L9VHM4	0.0	A0A0L9VHM4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3TC58	0.0	A0A0S3TC58_PHAAN; Uncharacterized protein
STRING	XP_007152597.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7313	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.2	1e-52	MYB_related family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]