PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g03770.1
Common NameLR48_Vigan10g082800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 448aa    MW: 48807.4 Da    PI: 7.3962
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g03770.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-09100121426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C+++ + G C+yG+rCkF H+
  Vang02g03770.1 100 KVCNYWIQ-GNCSYGERCKFLHS 121
                     68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.2721844IPR000571Zinc finger, CCCH-type
SMARTSM003560.212043IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.27797123IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-698122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-798121IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-6100121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-7100120IPR000571Zinc finger, CCCH-type
SuperFamilySSF509789.34E-50120175IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.3E-50121179IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.2E-6127166IPR001680WD40 repeat
PfamPF004001.1E-4130166IPR001680WD40 repeat
PROSITE profilePS5008214.385134175IPR001680WD40 repeat
PROSITE profilePS5029413.211134175IPR017986WD40-repeat-containing domain
PROSITE patternPS006780153167IPR019775WD40 repeat, conserved site
PRINTSPR003202.6E-6153167IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.130.10.102.3E-50219438IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.9229266IPR001680WD40 repeat
SuperFamilySSF509789.34E-50236439IPR017986WD40-repeat-containing domain
PROSITE profilePS5029421.436236446IPR017986WD40-repeat-containing domain
SMARTSM003203.7E-4273310IPR001680WD40 repeat
PfamPF004000.0013277310IPR001680WD40 repeat
PROSITE profilePS5008213.282280319IPR001680WD40 repeat
PROSITE patternPS006780297311IPR019775WD40 repeat, conserved site
PRINTSPR003202.6E-6297311IPR020472G-protein beta WD-40 repeat
SMARTSM003202.1E-4313350IPR001680WD40 repeat
PfamPF004000.0035315349IPR001680WD40 repeat
PRINTSPR003202.6E-6337351IPR020472G-protein beta WD-40 repeat
SMARTSM003200.6354397IPR001680WD40 repeat
SMARTSM003202.2400437IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDVDGGTKRV YNRLGGDGKH QKVCFHWQAG KCNRYPCPFL HSELPASSHS NGASSKRAYD  60
NSGLSGFSGQ RGRPNFNNTW GRGGGRGGGG GRGVVVKAEK VCNYWIQGNC SYGERCKFLH  120
SWKVGDGFSL LTQLEGHQKA VSAIAFPSGS DKLYTGSTDE TARIWDCQSG KVVPFEVVEE  180
VRLILVFFFL VPLQCVGVIN LGGEVGCMIS EGPWVFVGIP NSVKAWNTQN LMELSLSGPV  240
GQVYALVVNN DMLFAGTQDG SILAWKFNVG NNCFEPAASL KGHSRGVVSL VVGANRLYSG  300
SMDNTIRVWN LETLQCIQTL TEHTSVVMSV LCWEQFLLSC SLDKTVKVWY ATESGNLEVT  360
YTHNEEHGIL TLCGMHDSQG KPILLCACND NTVRLYDLPS FAERGKILTK QEVRAMQIGP  420
NGIFFTGDGT GEVRVWNWSA ETTATVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-231224371321Tako8
6g6n_A5e-231224371321Tako8
6g6n_B5e-231224371321Tako8
6g6n_C5e-231224371321Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18191RGGGRGGGGGR
28390GGRGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g03770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440414.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0L9VIQ30.0A0A0L9VIQ3_PHAAN; Uncharacterized protein
STRINGXP_007152351.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]