PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g04440.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 632aa    MW: 70733.2 Da    PI: 4.4717
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g04440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.6e-11509553246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT+eEd+ l+  v+ +G ++W +Ia+ +g+ Rt+ qc sr+q 
   Vang02g04440.1 509 GAWTKEEDKSLLLIVQDMGIRNWFSIASALGTSRTPFQCLSRFQR 553
                      79*****************************************96 PP
2Myb_DNA-binding26.31.7e-08563599340
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                       WT+eEd +l  av+ +G  +W  +a+ +  +Rt+ qc
   Vang02g04440.1 563 EWTEEEDAQLCSAVTYFGDSNWQCVASVLE-RRTGTQC 599
                      7*****************************.8888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7406504IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-8409425IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-8475514IPR009057Homeodomain-like
PROSITE profilePS500904.995477502IPR017877Myb-like domain
PROSITE profilePS5129414.096503559IPR017930Myb domain
SuperFamilySSF466894.23E-20507601IPR009057Homeodomain-like
SMARTSM007173.5E-10507557IPR001005SANT/Myb domain
CDDcd001676.84E-8510555No hitNo description
PfamPF139218.5E-16511572No hitNo description
Gene3DG3DSA:1.10.10.601.0E-15515563IPR009057Homeodomain-like
PROSITE profilePS500908.165556601IPR017877Myb-like domain
SMARTSM007170.37560609IPR001005SANT/Myb domain
CDDcd001674.45E-6563608No hitNo description
Gene3DG3DSA:1.10.10.603.1E-10564602IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MHQTFTLTLS LLRSPNTLNA MTPRVDDFEN DNLSSTDDDD DDGFKDDMAA LSRACMIVVP  60
GADDNFAAED DVPSLEPLTD AGTAIVPVAT DSDSDDQDDL ECLKRVQSLY QPLSVLPPLE  120
PAVVVSDDDD GVDDLETVRA IMKRFGDYSE GLHEGGIKKL VAEDQISSMG CEGDIANGST  180
HYEPDGGALC PFSQNPMEAA TEELIENIEM QLSDFVESSE PDAWESSRLQ QKRLSCPPVV  240
QCFIDAIKKN RDLQRFLRGK LIELEAKIEE NKKIRNKIKI LKDFQASCTR RTGNVLSLKK  300
DPRVQLISAK RSPKKSKPLI RRLNLQSLLL DLGIMPDLGL LAGNMAFVTF LVLSKCQLSL  360
IILEILDPTF SWQKRRKVTS ICYGPEENSR VANYRMVLER FPLSLERKKW SKADRGNLFK  420
GIKQQFQEMV LELSLSLDRT SSEGLLGNAD DMDNIIASVE DLEVTPERIR IFLPKVNWDL  480
IASMYVGCHT GSECESRWLN YEDPLVNQGA WTKEEDKSLL LIVQDMGIRN WFSIASALGT  540
SRTPFQCLSR FQRSLNPSML NSEWTEEEDA QLCSAVTYFG DSNWQCVASV LERRTGTQCS  600
NSIVEKWQVG KGSLYNPVST GREYLVTSLG W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-154776089151MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-154776089151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g04440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027924564.10.0uncharacterized protein LOC114182022
TrEMBLA0A4D6LTC70.0A0A4D6LTC7_VIGUN; Myb proto-oncogene protein
STRINGXP_007153075.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.25e-90myb domain protein 4r1