PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g04930.1
Common NameLR48_Vigan10g020900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 209aa    MW: 23528 Da    PI: 4.2309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g04930.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17655154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s ykGV ++k +g++vAeIrdp     +  r++lg+f+t++eAa a+++ ++++e
  Vang02g04930.1  6 SVYKGVQRRK-WGKYVAEIRDPI----QgVRVWLGTFDTEQEAAMAYERKKNEFE 55
                    78****8887.**********82....36**********99**********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.02E-21649No hitNo description
PfamPF008475.7E-11655IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-16654IPR016177DNA-binding domain
SMARTSM003806.4E-16772IPR001471AP2/ERF domain
PROSITE profilePS5103217.925766IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-21757IPR001471AP2/ERF domain
PRINTSPR003676.6E-9819IPR001471AP2/ERF domain
PRINTSPR003676.6E-93046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRKPSSVYKG VQRRKWGKYV AEIRDPIQGV RVWLGTFDTE QEAAMAYERK KNEFERSRKR  60
DAVAFDSSKE VLFHASPSSV LDVCTTKASL DVSDLNDSVK ENFNVEKVGE GGGTDVEVEP  120
VNSEDNSTQL LLEEPVMASL FGYDGFYLDE AEKRGILLDN EFHNFLDNDI KGGFMWNVEH  180
GEATVLPPVD SSFDELAWID ETLDWESS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g04930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437938.11e-152PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLA0A0L9VHB31e-151A0A0L9VHB3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TD461e-151A0A0S3TD46_PHAAN; Uncharacterized protein
STRINGXP_007152764.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1598167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-18ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]