PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g05490.1
Common NameLR48_Vigan10g103300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 589aa    MW: 64540 Da    PI: 6.154
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g05490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.31.5e-832215882374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++L+e+A a+ +g+  +++++L+rl+       + + +l+ +++ AL++r++     +    p++e       e++ +++l  e s ++k++ +
  Vang02g05490.1 221 KQTLMEAASAIVEGKYDMVTEILNRLNGP-----NRTDKLTDCMVLALKSRMNP----VEYPPPVKEL---FGYEHAESTQLILENSMCFKVGLM 303
                     689**********************9854.....6789***************9....3323333333...499999****************** PP

            GRAS  97 taNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +aN aIlea+ +e   ++  ++Df+i+qG Q+p L++aL++R ++  +l+i +v++  sgs+++++ +g+ L+++Ae+ ++ fef+++ +++l++
  Vang02g05490.1 304 AANLAILEAAFEEkteNKFCVVDFEIGQGKQYPHLINALSARVQN-VTLKIVAVAE--SGSEDRVHIVGDMLSRLAERKRIGFEFRLVSTQKLTE 395
                     ********97555466899***********************655.89********..77***************************9999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl...eaklprese 280
                     l+ e+L ++++E+l Vn++++l +++desvs+e++rde+L+ vk+l P+vv++veqe++ n+++Fl+r++e+l++y al++s+   +++   +s+
  Vang02g05490.1 396 LTRESLGCNEDEVLMVNFAFKLNKIPDESVSTENPRDELLRRVKGLAPRVVTIVEQEMNANTAPFLARVAETLSFYGALLESMtsrDNNNTINSS 490
                     **********************************************************************************954334455566* PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd....gyrveeesgslvlgWkdrpLvsv 370
                     +r+ +E+  l r++ n vaceg++r+er+e ++kWr+r+++aGF+  pls+++a+++k+ l  ++ ++    g +v+ee+g ++ gW++r+L+++
  Vang02g05490.1 491 DRVRLEEG-LTRKLHNSVACEGRDRIERCEVFGKWRARMSMAGFELKPLSQNMAESIKSRLTATNnNNrvnsGLTVKEENGGIFSGWMGRTLTVA 584
                     ********.**************************************************998766322222279999****************** PP

            GRAS 371 SaWr 374
                     SaWr
  Vang02g05490.1 585 SAWR 588
                     ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.662186563IPR005202Transcription factor GRAS
PfamPF035145.2E-81221588IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MSSPGFTGGG GASEYFAGAG GFTGRSIPAA TMNNPNGVAT ATANLHPLYR TQQQNLPAIF  60
SQVSMDNFPE LHNQNPSLYQ QQRFGVPLLH QLRPQPINLP SNGSGPMPSP NFGYRNSDLG  120
MPQNRVRLSG PLPVPVQVAE PEKKIMDHRL LELEKQLLED NDEGEADAAS VITSSEWSET  180
YQNLISPGPV QKLASTSPTS STTSSTSSSS SIASPASGCS KQTLMEAASA IVEGKYDMVT  240
EILNRLNGPN RTDKLTDCMV LALKSRMNPV EYPPPVKELF GYEHAESTQL ILENSMCFKV  300
GLMAANLAIL EAAFEEKTEN KFCVVDFEIG QGKQYPHLIN ALSARVQNVT LKIVAVAESG  360
SEDRVHIVGD MLSRLAERKR IGFEFRLVST QKLTELTRES LGCNEDEVLM VNFAFKLNKI  420
PDESVSTENP RDELLRRVKG LAPRVVTIVE QEMNANTAPF LARVAETLSF YGALLESMTS  480
RDNNNTINSS DRVRLEEGLT RKLHNSVACE GRDRIERCEV FGKWRARMSM AGFELKPLSQ  540
NMAESIKSRL TATNNNNRVN SGLTVKEENG GIFSGWMGRT LTVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2329958891375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g05490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440488.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-135SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0L9VJB60.0A0A0L9VJB6_PHAAN; Uncharacterized protein
STRINGXP_007152201.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-136SCARECROW-like 8
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]