PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g05830.1

Common Name

LR48_Vigan10g108700

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 319aa MW: 34727.1 Da PI: 8.0609

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g05830.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.5	7.7e-30	132	190	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s gC ++k+vers+++p+++++tY+geH+h Vang02g05830.1 132 TDSWAWRKYGQKPIKGSPYPRNYYRCSSCkGCAARKQVERSNTEPNMFIVTYTGEHKHA 190 69**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-30	117	192	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-26	126	192	IPR003657	WRKY domain
PROSITE profile	PS50811	31.892	126	192	IPR003657	WRKY domain
SMART	SM00774	5.8E-35	131	191	IPR003657	WRKY domain
Pfam	PF03106	4.4E-25	133	189	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007263	Biological Process	nitric oxide mediated signal transduction
GO:0009739	Biological Process	response to gibberellin
GO:0042742	Biological Process	defense response to bacterium
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
NPTTTTTISS TITSAIGINP NSTFSDVAGF IGQQHIQQGH HHHLVPAPTN HTSIGAPSTT 60 GFDRFQEQHH QQQHQSQTPE QQQRKQNLPQ LQAPQTSPIL SPTTQPQTPR SRKRKNHQKK 120 IVRHVTADNL STDSWAWRKY GQKPIKGSPY PRNYYRCSSC KGCAARKQVE RSNTEPNMFI 180 VTYTGEHKHA KPVHRNSLAG STRTKPSPTG LPEANEAVSG IKIENACSST SELSTTSLKS 240 GTPENEETVA DGEPDFPEME VDPDALSDND YDLLIPNTGA MSDAVLLGLT NGAQTKGSDR 300 NSESGLTQSK SDPFSNTV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-19	120	192	2	74	WRKY transcription factor 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00561	DAP	Transfer from AT5G52830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g05830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439467.1	0.0	PREDICTED: probable WRKY transcription factor 27
TrEMBL	A0A0L9VJG9	0.0	A0A0L9VJG9_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3TAK0	0.0	A0A0S3TAK0_PHAAN; Uncharacterized protein
STRING	XP_007152141.1	1e-159	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6794	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	4e-53	WRKY DNA-binding protein 27

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]