PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g06660.2
Common NameLR48_Vigan08g019400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 204aa    MW: 23136.9 Da    PI: 7.5808
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g06660.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.3e-202174356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++ ++t+eq+++Le++F++n+++  e++ +LA++lg++ rqV +W+qN+Ra++k
  Vang02g06660.2 21 NKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWK 74
                    56789************************************************9 PP
2HD-ZIP_I/II112.23.3e-3621112293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+rl++eqv++LE++F ++ kLepe+K +la++Lg+ prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+ve+L+++lk+
  Vang02g06660.2  21 NKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLEKDVERLKADLKK 112
                     79***************9999*******************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-181377IPR009057Homeodomain-like
PROSITE profilePS5007116.2611676IPR001356Homeobox domain
SMARTSM003894.5E-171880IPR001356Homeobox domain
CDDcd000861.91E-151977No hitNo description
PfamPF000463.4E-172174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-182280IPR009057Homeodomain-like
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGDLFFSFKT QEHGHQRAKH NKKRLTEEQV TILEKCFASN MKLEPEQKFH LANQLGVPPR  60
QVAIWYQNKR ARWKTQSLEV DHGVLQAKLE NVMAEKKQLE KDVERLKADL KKAQEMLLIG  120
DVVKGGKNSN YNNGNNNKNN NNNNNNNNGS CCEFSTSFEE GGSSGVVLDD HECWQSGEVM  180
QVEELYAYFM GANYGSGLHE KRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g06660.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432865.11e-145PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-52
TrEMBLA0A0L9V3651e-149A0A0L9V365_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S9P61e-149A0A0S3S9P6_PHAAN; Uncharacterized protein
STRINGXP_007133162.11e-116(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.18e-35homeobox protein 52
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]