PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g08200.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 368aa    MW: 40879.5 Da    PI: 8.2683
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g08200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1738.7e-54291561128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+k+++++l++  +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++
  Vang02g08200.1  29 LPPGFRFHPTDEELVVHYLKRKASSTPLPV-AIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPILTS 122
                     79****************************.88***************8888999**************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Vang02g08200.1 123 dGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 156
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-6523192IPR003441NAC domain
PROSITE profilePS5100561.54729192IPR003441NAC domain
PfamPF023653.3E-2830156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MHDTDTIDRN HISIMDSTDS SSGSQHPHLP PGFRFHPTDE ELVVHYLKRK ASSTPLPVAI  60
IADVDLYKFD PWELPSKATF GEQEWYFFSP RDRKYPNGVR PNRAATSGYW KATGTDKPIL  120
TSDGHQKVGV KKALVFYGGK PPKGVKTNWI MHEYRLVHDS FNSTSKPPPL VPPNKKNSLR  180
LDDWVLCRIY KKSNSSTVTR PPLMEHGEEL SMENMLPTMS TLSMANNNTQ NSKPPSSRST  240
SYGALGLEND DNFFDGILAV DHQSMQSGSD SHLFSPNSKG TNFPMKRALT SQQLWNETGS  300
PGSSSSCKRF HGDLNSGSSN AEDNDSFVSL LSQFPQNATF QPNAIHASVG NGVQRQQQFH  360
LPGINWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-752919617169NO APICAL MERISTEM PROTEIN
1ut4_B2e-752919617169NO APICAL MERISTEM PROTEIN
1ut7_A2e-752919617169NO APICAL MERISTEM PROTEIN
1ut7_B2e-752919617169NO APICAL MERISTEM PROTEIN
3swm_A3e-752919620172NAC domain-containing protein 19
3swm_B3e-752919620172NAC domain-containing protein 19
3swm_C3e-752919620172NAC domain-containing protein 19
3swm_D3e-752919620172NAC domain-containing protein 19
3swp_A3e-752919620172NAC domain-containing protein 19
3swp_B3e-752919620172NAC domain-containing protein 19
3swp_C3e-752919620172NAC domain-containing protein 19
3swp_D3e-752919620172NAC domain-containing protein 19
4dul_A2e-752919617169NAC domain-containing protein 19
4dul_B2e-752919617169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g08200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411627.10.0PREDICTED: NAC transcription factor 25-like
SwissprotQ8GY421e-110NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0S3QZL40.0A0A0S3QZL4_PHAAN; Uncharacterized protein
STRINGXP_007159283.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-102NAC domain containing protein 25