PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g08580.1

Common Name

LR48_Vigan01g060200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LSD

Protein Properties

Length: 98aa MW: 10578.3 Da PI: 8.1013

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g08580.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.7	2.2e-14	9	33	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lLsYPrGA++V+C++C +V Vang02g08580.1 9 CGSCHRLLSYPRGAKHVKCSCCEAV 33 ***********************98 PP
2	zf-LSD1	47.6	2.7e-15	47	71	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA++VRC++C++V Vang02g08580.1 47 CGSCAVLLMYPFGASHVRCSSCQFV 71 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.4E-16	6	36	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.4E-12	9	33	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.2E-13	44	72	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.1E-12	47	71	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MHSWGQMVCG SCHRLLSYPR GAKHVKCSCC EAVNIVLEAD QVGQVECGSC AVLLMYPFGA 60 SHVRCSSCQF VTEIGAHNER PPWSIQQRKP VPAKSGC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g08580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-55	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017412978.1	3e-64	PREDICTED: protein LOL2
Swissprot	O65426	8e-38	LOL2_ARATH; Protein LOL2
TrEMBL	A0A0L9TKT9	7e-63	A0A0L9TKT9_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3QZJ2	7e-63	A0A0S3QZJ2_PHAAN; Uncharacterized protein
STRING	GLYMA07G31600.1	2e-55	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-40	lsd one like 2

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]