PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g08600.1
Common NameLR48_Vigan01g059100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 197aa    MW: 22527.9 Da    PI: 8.4853
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g08600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-123683655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                    + +Er+RR+++++ f++L ++lP++   +s+   s  +   +A++YIk+Lq
  Vang02g08600.1 36 KLVERNRRNQMKDLFSKLNSVLPHQ---SSREgISRPDQIGEAIDYIKNLQ 83
                    679*********************8...77888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.5533082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-133496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-73587No hitNo description
Gene3DG3DSA:4.10.280.104.8E-123598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-63688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-83683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVSHHISYPR TLTLYEWLIH CILMENNPSS STSDRKLVER NRRNQMKDLF SKLNSVLPHQ  60
SSREGISRPD QIGEAIDYIK NLQIKLEKMK EKKSNLTDIV RSRTASMNME LKSPQFKIQQ  120
MGSVLEVVLV TGLDFHFIFN ETIRVLQEEG SDIVNASYTV VENAVLHKIH CQVEESVNGA  180
SRISEKLKNL CQWSVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g08600.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434516.11e-124PREDICTED: uncharacterized protein LOC108341326
TrEMBLA0A0L9TKN21e-143A0A0L9TKN2_PHAAN; Uncharacterized protein
STRINGXP_007159331.13e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-43bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]