PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g09420.1

Common Name

LR48_Vigan10g166000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 464aa MW: 53049.4 Da PI: 5.7668

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g09420.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	288.7	1.6e-88	80	461	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+ A+ +++++ ++ + L +l +++s gd++qR++ayf+ +Laarl+ s y+ + ++ts +ee+ a++ ++ vsP+++f+h Vang02g09420.1 80 LIHLLLSTATSIDERNYCATLENLIELYQTVSLIGDSVQRVVAYFADGLAARLLTRKSPFYDMVMEEPTS----EEEFLAFTDLYRVSPYYQFAH 170 689**************************************************999999988777775....788889999******** PP GRAS 96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel..gvpfefnvl 181 +taNqaIlea e+e + +H+iDfd+s+G+QWp+L+q+L++++ ++ slRiTg+g+ + +el+et+ rL +f + + ++ fef+ l Vang02g09420.1 171 FTANQAILEAYEEEeernnKSLHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGN----NLKELQETEARLVSFSKGFsnQLVFEFQGL 261 ********9988887889******************99755566*****....99**********96622677888886 PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 + + +l +Lr k++E+laVnlv l +l + +++ +++L lv sl P +vv+v qe +++ ++Fl rf+e+l+y++a+fdsl+ lp Vang02g09420.1 262 LR---GSSRLINLRRKKNETLAVNLVSYLNTLS-SFMKV----SDTLGLVHSLGPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLP 348 33...3344579999********999997.33333....46********************************************** PP GRAS 277 reseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve..ee............sg 356 es er +E++llg+ei++++ + + e++e+W+ r+e+ F ++s+k + qaklll++ y ++ ee +g Vang02g09420.1 349 LESTERLRIEKKLLGKEIKSMLNYDMDGvDCPKYERMETWKTRMENHEFVGRKISSKCVIQAKLLLKMRTHY-YPLQfeEEggsggfrvserdEG 442 ******************988776457899****************************986522.3333211133333333333455 PP GRAS 357 slv.lgWkdrpLvsvSaWr 374 ++ lgW++r L++vSaW+ Vang02g09420.1 443 RVIsLGWQNRFLLTVSAWQ 461 5558************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.104	54	427	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.6E-86	80	461	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MEGSEEEELL NLTLSVDAGG ERRKKGRARD DDTNSLVIPM KSSEGYEGKI FRLLQMRELM 60 LREDHRRKGV VEDGNNGLPL IHLLLSTATS IDERNYCATL ENLIELYQTV SLIGDSVQRV 120 VAYFADGLAA RLLTRKSPFY DMVMEEPTSE EEFLAFTDLY RVSPYYQFAH FTANQAILEA 180 YEEEEERNNK SLHVIDFDVS YGFQWPSLIQ SLSEKATSGN RISLRITGFG NNLKELQETE 240 ARLVSFSKGF SNQLVFEFQG LLRGSSRLIN LRRKKNETLA VNLVSYLNTL SSFMKVSDTL 300 GLVHSLGPSI VVLVKQEGSR SLKTFLSRFT ESLHYFAAMF DSLDDCLPLE STERLRIEKK 360 LLGKEIKSML NYDMDGVDCP KYERMETWKT RMENHEFVGR KISSKCVIQA KLLLKMRTHY 420 YPLQFEEEGG SGGFRVSERD EGRVISLGWQ NRFLLTVSAW QPI*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MEGSEEEELL NLTLSVDAGG ERRKKGRARD DDTNSLVIPM KSSEGYEGKI FRLLQMRELM  60
LREDHRRKGV VEDGNNGLPL IHLLLSTATS IDERNYCATL ENLIELYQTV SLIGDSVQRV  120
VAYFADGLAA RLLTRKSPFY DMVMEEPTSE EEFLAFTDLY RVSPYYQFAH FTANQAILEA  180
YEEEEERNNK SLHVIDFDVS YGFQWPSLIQ SLSEKATSGN RISLRITGFG NNLKELQETE  240
ARLVSFSKGF SNQLVFEFQG LLRGSSRLIN LRRKKNETLA VNLVSYLNTL SSFMKVSDTL  300
GLVHSLGPSI VVLVKQEGSR SLKTFLSRFT ESLHYFAAMF DSLDDCLPLE STERLRIEKK  360
LLGKEIKSML NYDMDGVDCP KYERMETWKT RMENHEFVGR KISSKCVIQA KLLLKMRTHY  420
YPLQFEEEGG SGGFRVSERD EGRVISLGWQ NRFLLTVSAW QPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-52	103	462	42	380	Protein SCARECROW
5b3h_A	1e-52	103	462	41	379	Protein SCARECROW
5b3h_D	1e-52	103	462	41	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g09420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017438287.1	0.0	PREDICTED: scarecrow-like protein 21
TrEMBL	A0A0L9VLB8	0.0	A0A0L9VLB8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3TA90	0.0	A0A0S3TA90_PHAAN; Uncharacterized protein
STRING	XP_007151894.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6200	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	2e-52	GRAS family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]