PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g09420.2

Common Name

LR48_Vigan10g166000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 425aa MW: 48765.7 Da PI: 6.5289

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g09420.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	289.1	1.2e-88	41	422	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+ A+ +++++ ++ + L +l +++s gd++qR++ayf+ +Laarl+ s y+ + ++ts +ee+ a++ ++ vsP+++f+h Vang02g09420.2 41 LIHLLLSTATSIDERNYCATLENLIELYQTVSLIGDSVQRVVAYFADGLAARLLTRKSPFYDMVMEEPTS----EEEFLAFTDLYRVSPYYQFAH 131 689**************************************************999999988777775....788889999******** PP GRAS 96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel..gvpfefnvl 181 +taNqaIlea e+e + +H+iDfd+s+G+QWp+L+q+L++++ ++ slRiTg+g+ + +el+et+ rL +f + + ++ fef+ l Vang02g09420.2 132 FTANQAILEAYEEEeernnKSLHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGN----NLKELQETEARLVSFSKGFsnQLVFEFQGL 222 ********9988887889******************99755566*****....99**********96622677888886 PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 + + +l +Lr k++E+laVnlv l +l + +++ +++L lv sl P +vv+v qe +++ ++Fl rf+e+l+y++a+fdsl+ lp Vang02g09420.2 223 LR---GSSRLINLRRKKNETLAVNLVSYLNTLS-SFMKV----SDTLGLVHSLGPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLP 309 33...3344579999********999997.33333....46********************************************** PP GRAS 277 reseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve..ee............sg 356 es er +E++llg+ei++++ + + e++e+W+ r+e+ F ++s+k + qaklll++ y ++ ee +g Vang02g09420.2 310 LESTERLRIEKKLLGKEIKSMLNYDMDGvDCPKYERMETWKTRMENHEFVGRKISSKCVIQAKLLLKMRTHY-YPLQfeEEggsggfrvserdEG 403 ******************988776457899****************************986522.3333211133333333333455 PP GRAS 357 slv.lgWkdrpLvsvSaWr 374 ++ lgW++r L++vSaW+ Vang02g09420.2 404 RVIsLGWQNRFLLTVSAWQ 422 5558************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.104	15	388	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-86	41	422	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MKSSEGYEGK IFRLLQMREL MLREDHRRKG VVEDGNNGLP LIHLLLSTAT SIDERNYCAT 60 LENLIELYQT VSLIGDSVQR VVAYFADGLA ARLLTRKSPF YDMVMEEPTS EEEFLAFTDL 120 YRVSPYYQFA HFTANQAILE AYEEEEERNN KSLHVIDFDV SYGFQWPSLI QSLSEKATSG 180 NRISLRITGF GNNLKELQET EARLVSFSKG FSNQLVFEFQ GLLRGSSRLI NLRRKKNETL 240 AVNLVSYLNT LSSFMKVSDT LGLVHSLGPS IVVLVKQEGS RSLKTFLSRF TESLHYFAAM 300 FDSLDDCLPL ESTERLRIEK KLLGKEIKSM LNYDMDGVDC PKYERMETWK TRMENHEFVG 360 RKISSKCVIQ AKLLLKMRTH YYPLQFEEEG GSGGFRVSER DEGRVISLGW QNRFLLTVSA 420 WQPI*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MKSSEGYEGK IFRLLQMREL MLREDHRRKG VVEDGNNGLP LIHLLLSTAT SIDERNYCAT  60
LENLIELYQT VSLIGDSVQR VVAYFADGLA ARLLTRKSPF YDMVMEEPTS EEEFLAFTDL  120
YRVSPYYQFA HFTANQAILE AYEEEEERNN KSLHVIDFDV SYGFQWPSLI QSLSEKATSG  180
NRISLRITGF GNNLKELQET EARLVSFSKG FSNQLVFEFQ GLLRGSSRLI NLRRKKNETL  240
AVNLVSYLNT LSSFMKVSDT LGLVHSLGPS IVVLVKQEGS RSLKTFLSRF TESLHYFAAM  300
FDSLDDCLPL ESTERLRIEK KLLGKEIKSM LNYDMDGVDC PKYERMETWK TRMENHEFVG  360
RKISSKCVIQ AKLLLKMRTH YYPLQFEEEG GSGGFRVSER DEGRVISLGW QNRFLLTVSA  420
WQPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-53	64	423	42	380	Protein SCARECROW
5b3h_A	6e-53	64	423	41	379	Protein SCARECROW
5b3h_D	6e-53	64	423	41	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g09420.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017438287.1	0.0	PREDICTED: scarecrow-like protein 21
TrEMBL	A0A0L9VLB8	0.0	A0A0L9VLB8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3TA90	0.0	A0A0S3TA90_PHAAN; Uncharacterized protein
STRING	XP_007151894.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	6e-53	GRAS family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]