PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g11040.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 83aa    MW: 9236.17 Da    PI: 11.9963
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g11040.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.84.4e-11933125
                    S---SHHHHHHHHHHHHHHHHHHHH CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAe 25
                    kri+nk+n+qvtf+kRrng+l KA+
  Vang02g11040.2  9 KRIKNKINKQVTFAKRRNGLLNKAY 33
                    79**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.128133IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-11133IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-7155IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-12323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-71033IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-122338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MGRGRVELKR IKNKINKQVT FAKRRNGLLN KAYMSSQSFV MLRLLSSFFP TVASSMSSTA  60
PQGICTFINK LFMLMVVSCL IV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g11040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-137AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.12e-16MIKC_MADS family protein