PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g11940.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 232aa    MW: 25969 Da    PI: 6.8501
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g11940.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1195.9e-3713120589
             TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.eaesssssasnsss 87 
                      d  ski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++k+aikel+++           s+ss+sec + + +++s+ ++++
  Vang02g11940.1  13 PDNISKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSknstnseegakSFSSSSECdD-DCEVVSEIKQKQ 106
                     5778*********************************************************777777777776666677743.333333333333 PP

             TCP  88 g............k 89 
                     +            +
  Vang02g11940.1 107 QlitgdaaapnnlQ 120
                     33434322222221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.9191270IPR017887Transcription factor TCP subgroup
PfamPF036346.8E-3614124IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVLLTTVVDD TAPDNISKIY TSQGLRDRRV RLSIEIARKF FDLQDMLGFD KASNTLEWLF  60
NKSKRAIKEL ARSKNSTNSE EGAKSFSSSS ECDDDCEVVS EIKQKQQLIT GDAAAPNNLQ  120
QGHSHHLVGS EAPRDDFNVI EESIVIKRKL KPSLMSSSHH HHQNLMIPKE PPCFNNNNIE  180
YHHPFSNLSP NWDANGSTGR SNFCAIASMN LSTGLQIFGK SWEECTNPRL H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g11940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-177AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451264.15e-73transcription factor DICHOTOMA
TrEMBLA0A151RAI51e-96A0A151RAI5_CAJCA; Transcription factor TCP1
STRINGAES841862e-72(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-25TCP family protein