PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g11990.1
Common NameLR48_Vigan10g196500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 148aa    MW: 15603.6 Da    PI: 8.7715
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g11990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.55.2e-3948147199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC  +C++ap+f  +q ++kfa+vhk+FGasnv+kll+++p ++r++a++++ yeA+ar++dPvyG+v++il+lqqq+++l+ael
  Vang02g11990.1  48 PCGACKFLRRKCIGGCIFAPHFGTDQgAAKFAAVHKVFGASNVSKLLSNIPANRRQEAATTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 142
                     7***********************9989******************************************************************* PP

          DUF260  95 allke 99 
                     a+l++
  Vang02g11990.1 143 AMLQT 147
                     *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.20647148IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3948146IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEDAQARNSN DGDDNGGSGS KRKGPVLRRA MATQTQDEAM VGSSPATPCG ACKFLRRKCI  60
GGCIFAPHFG TDQGAAKFAA VHKVFGASNV SKLLSNIPAN RRQEAATTIS YEAQARLSDP  120
VYGCVSTILA LQQQVASLQA ELAMLQTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-384814811110LOB family transfactor Ramosa2.1
5ly0_B2e-384814811110LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g11990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524233.15e-98LOB domain-containing protein 20
SwissprotQ9SRV34e-61LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0L9VM831e-105A0A0L9VM83_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T9I81e-105A0A0S3T9I8_PHAAN; Uncharacterized protein
STRINGXP_007151760.13e-89(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-51LOB domain-containing protein 20
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]