PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g12310.2

Common Name

LR48_Vigan10g210300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 241aa MW: 27396.7 Da PI: 5.3907

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g12310.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.7	1.3e-13	14	74	1	46
TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqk 46 rg+WT eEd +l + + G + W++Ia++++ gRt++++k++w++ Vang02g12310.2 14 RGPWTIEEDHKLMNFILNNGIHcwravpklagisfvknLWSKIASHFP-GRTDNEIKNHWNT 74 89********************************************.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.15E-13	3	84	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-19	5	81	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.721	9	80	IPR017930	Myb domain
SMART	SM00717	8.7E-8	13	78	IPR001005	SANT/Myb domain
CDD	cd00167	3.06E-6	16	74	No hit	No description
Pfam	PF00249	4.0E-7	53	74	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRAV PKLAGISFVK NLWSKIASHF 60 PGRTDNEIKN HWNTKIKKRL KVLGLDPLTL MPIEQKQQQS GDDDKLKTEK QQKSTSKGSD 120 QGVDSKPLDM HATGEEPKTE DKMEEKKVTW DDTTGFLNNY EMLCSQLELG SWLSQETKAS 180 TSSYCSSSFS LDDSSNLSVC ESSYLQENSL QQWVEDLDSS LSWDSFNPLH TDFPFLENRQ 240 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g12310.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439483.1	1e-152	PREDICTED: myb-related protein 315
TrEMBL	A0A0L9VMB6	1e-151	A0A0L9VMB6_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T8K8	1e-151	A0A0S3T8K8_PHAAN; Uncharacterized protein
STRING	XP_007151568.1	1e-121	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	8e-47	myb domain protein 40

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]