PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g12380.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 351aa    MW: 39487.4 Da    PI: 5.2646
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g12380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.12.6e-22172258290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +Y+ YA   GFs+rk+  +ks+ ng +++r+++C ++g+r +++ +    r+ ++etrtgC a++++ ++ +gk++vt++e+eHnHe++
  Vang02g12380.1 172 CYSMYAVLKGFSIRKDFVNKSRINGAVVSRRYTCHRQGYRPNKNGT--YLRKFQQETRTGCLAHMTIARQPNGKFQVTHFETEHNHEFV 258
                     7***************************************998877..99999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-20172258IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MPSAATFTSL PLTVLCSLSE TEILLAFTDV FHLCSLLFSL LLMEGTEPDI ERHPLEDAEN  60
ECPISAEVVL GQESQTRNPC DSSVEDTIKV IDTENECTRP NVCAVDHSHI KINDECQTSN  120
IFHDDKFHID NVSSGELCEN PCPSTEVKNE NEIYVAPKIG MEFESEDNAY KCYSMYAVLK  180
GFSIRKDFVN KSRINGAVVS RRYTCHRQGY RPNKNGTYLR KFQQETRTGC LAHMTIARQP  240
NGKFQVTHFE TEHNHEFVKP CTAHMLPSQK KLSFAQAIEA NLTVSGLDET PKLGMGFDSD  300
KHAYEFYNTY AGRVGIHAEY LVMHSHELEL CGKLKLEDES RCDHSFPANA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g12380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505851.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_022638920.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S3UIJ50.0A0A1S3UIJ5_VIGRR; protein FAR1-RELATED SEQUENCE 5
STRINGXP_007151573.11e-180(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.13e-19FAR1 family protein