PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g12630.1
Common NameLR48_Vigan10g218700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 359aa    MW: 39389.3 Da    PI: 7.901
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g12630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-1690135147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W   Ed +l++ v+q+G+ +W++ a++++ gR++k+c++rw++ 
   Vang02g12630.1  90 RGHWRSAEDAKLKEFVAQFGPQNWNSMAEHLP-GRSGKSCRLRWFNQ 135
                      899*****************************.***********996 PP
2Myb_DNA-binding57.82.5e-18142185146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+e+l++a+k +G++ W+tI+r ++ gRt++ +k++w+ 
   Vang02g12630.1 142 RKAFSEEEEEKLLNAHKVYGNK-WATISRLFP-GRTDNAVKNHWHV 185
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.91285136IPR017930Myb domain
SMARTSM007175.1E-1389138IPR001005SANT/Myb domain
PfamPF002497.0E-1590135IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-2790183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-2591143IPR009057Homeodomain-like
CDDcd001672.72E-1293134No hitNo description
PROSITE profilePS5129425.203137191IPR017930Myb domain
SMARTSM007171.6E-15141189IPR001005SANT/Myb domain
PfamPF002494.7E-15142184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-20144189IPR009057Homeodomain-like
CDDcd001672.08E-12144184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSAEMNVFPS PPVAVIGLQC FNIIGVMGHV GDMKSESSDI PFQILNPKSV EEEESSGVEA  60
TGLSLKPGEE LQANSYPAKG KIRHTKLCAR GHWRSAEDAK LKEFVAQFGP QNWNSMAEHL  120
PGRSGKSCRL RWFNQLDPRI NRKAFSEEEE EKLLNAHKVY GNKWATISRL FPGRTDNAVK  180
NHWHVIMARR QREKSCVFRR RKPTFQILPP KDLDLILPVN GCSESTISST IIDESASTGT  240
NLSFTSSSAK STPLPFLNHC QVQNVQTFGG ALMGLSGESR TPDRDVSFNK HFGAGKGSSE  300
TGHMGRVMGV DQSHYSDSNS SEVSESVATN KTTNLSMYGE SDNSANMLFI DFLGVGTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-33901907107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188202RRQREKSCVFRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g12630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439222.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A0L9VMK90.0A0A0L9VMK9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T9780.0A0A0S3T978_PHAAN; Uncharacterized protein
STRINGXP_007151515.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-63myb domain protein 56
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]