PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g14270.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Whirly
Protein Properties Length: 287aa    MW: 32255 Da    PI: 8.2857
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g14270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly41.91.9e-1375132156
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerk..ydWekkqsfa 56 
                     svy +k+ l++ ++ p+fe+ +sg++ ++r+G +ll++a++++  +  ydW++kq+  
  Vang02g14270.1  75 SVYTAKGVLTLTPKPPEFESKASGAFGVSREGYMLLQFAPSVGXEEsiYDWNQKQVVQ 132
                     79****************************************975444*******865 PP
2Whirly59.85.8e-1915924754139
          Whirly  54 sfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvk...gnesfsvPvskaefavlrsllv 139
                     +f+ls+ e+++l+ l++ es ef   +a+ +sn  +vrk+lkvePl d + + ++lsv ++  +    +e++++P+++a+ avlrs+++
  Vang02g14270.1 159 VFSLSVSEMGTLICLGAMESWEFSRKTAKAKSNGIEVRKVLKVEPLLDATSHSFSLSVYKKPANmeeIEENIYLPITRAQLAVLRSIFN 247
                     7*********************************************************9875551116789****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.107.7E-1965131IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.84E-1268131IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.7E-1576135IPR013742Plant transcription factor
SuperFamilySSF544474.08E-26158286IPR009044ssDNA-binding transcriptional regulator
PfamPF085368.3E-19159245IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.101.6E-26159267IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MFHIVHSLPL KHLSLPFHSF VPRIFIVPLN RNFSFIFPTS LFVRCNHSNI VEPFPPLPQY  60
PSVAELSQRV YADYSVYTAK GVLTLTPKPP EFESKASGAF GVSREGYMLL QFAPSVGXEE  120
SIYDWNQKQV VQDSYVFALQ MYKCVVDISL SGCLGATLVF SLSVSEMGTL ICLGAMESWE  180
FSRKTAKAKS NGIEVRKVLK VEPLLDATSH SFSLSVYKKP ANMEEIEENI YLPITRAQLA  240
VLRSIFNYIV PYLLGWNAFA STIKAEVYSQ MNSANPRYSA NNEWSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A2e-526928537219p24: plant transcriptional regulator PBF-2
1l3a_B2e-526928537219p24: plant transcriptional regulator PBF-2
1l3a_C2e-526928537219p24: plant transcriptional regulator PBF-2
1l3a_D2e-526928537219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g14270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-99AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438531.10.0PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like
TrEMBLA0A0S3T7B80.0A0A0S3T7B8_PHAAN; Uncharacterized protein
STRINGXP_007157686.11e-139(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64163251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.15e-61ssDNA-binding transcriptional regulator