PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g15380.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 94aa    MW: 10593 Da    PI: 8.5213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g15380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32.1e-0619601554
                    HHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS
             HLH 15 riNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54
                    +i +  ++Lr+l+P+ +   +s K  +s + +L+++++YI+sL
  Vang02g15380.1 19 QIIDLVSKLRQLVPEiR-DRRSDKvqVSASKVLQETCNYIRSL 60
                    5667779********76.4444444599999**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.042460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-81975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-81980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSRRSRQQS ASTRISDDQI IDLVSKLRQL VPEIRDRRSD KVQVSASKVL QETCNYIRSL  60
HREVDDLSER LSQLLATIDA DSPEAAIIRS LIN*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g15380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311284e-98KT031128.1 Glycine max clone HN_CCL_66 bHLH transcription factor (Glyma19g02510.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543767.12e-54transcription factor PRE5
RefseqXP_007151219.12e-54hypothetical protein PHAVU_004G027700g
RefseqXP_014507201.12e-54transcription factor PRE5
RefseqXP_017438920.12e-54PREDICTED: transcription factor PRE5
RefseqXP_027923623.12e-54transcription factor PRE5
RefseqXP_028196915.12e-54transcription factor PRE5-like
RefseqXP_028217318.12e-54transcription factor PRE5-like
SwissprotQ9LJX12e-41PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0K2CT676e-53A0A0K2CT67_SOYBN; BHLH transcription factor (Fragment)
TrEMBLA0A0S3T7L76e-53A0A0S3T7L7_PHAAN; Uncharacterized protein
TrEMBLA0A1S3UMB66e-53A0A1S3UMB6_VIGRR; transcription factor PRE5
TrEMBLA0A445HCA16e-53A0A445HCA1_GLYSO; Transcription factor PRE5
TrEMBLV7C1I46e-53V7C1I4_PHAVU; Uncharacterized protein
STRINGGLYMA13G05280.19e-54(Glycine max)
STRINGGLYMA19G02510.19e-54(Glycine max)
STRINGXP_007151219.19e-54(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.16e-36bHLH family protein