PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0300s00080.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 377aa    MW: 43114.4 Da    PI: 7.4587
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0300s00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.38.5e-2342108167
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                       rW+k+e++aL+++r++m+ ++r+++ k+plW++vskk++e g++rs+k+Ckek+en+ + y  +  +
  Vang0300s00080.1  42 RWPKEETMALLKIRSDMDVAFRDTNPKAPLWDQVSKKLAELGYNRSSKKCKEKFENIYNAYVGEHSS 108
                       8**********************************************************99776655 PP
2trihelix971.7e-30200290186
          trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+k+ev aLi++r+e++ +++ ++      +k+plWe++s++m+  g+ers+k+Ckekwen+nk++k++ke +k++ +++s+tcpy+++le
  Vang0300s00080.1 200 RWPKDEVEALIRLRTELDVQSQGNNnssngvSKGPLWEDISSAMKGLGYERSAKRCKEKWENINKYFKRMKEKNKRK-PQDSKTCPYYHHLE 290
                       8**************9999988544445666********************************************96.9***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.6423599IPR017877Myb-like domain
SMARTSM007175.4E-439101IPR001005SANT/Myb domain
CDDcd122033.14E-1941102No hitNo description
PfamPF138373.9E-1541110No hitNo description
Gene3DG3DSA:1.10.10.601.8E-5196262IPR009057Homeodomain-like
PROSITE profilePS500907.573196263IPR017877Myb-like domain
SMARTSM007178.1E-5197265IPR001005SANT/Myb domain
CDDcd122031.07E-20199270No hitNo description
PfamPF138377.1E-21199290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLEVSASPET PLANPEGGAA AVSEGLKAED GEAGDRNSAA SRWPKEETMA LLKIRSDMDV  60
AFRDTNPKAP LWDQVSKKLA ELGYNRSSKK CKEKFENIYN AYVGEHSSST TSCSGKGFRK  120
RKLTQFLDGL MREVIEKQET LQRKFVEVLE KCEKDRMARE EAWKKEELAL IKKERELLAQ  180
ERSIAAAKDE VVLAFLRNSR WPKDEVEALI RLRTELDVQS QGNNNSSNGV SKGPLWEDIS  240
SAMKGLGYER SAKRCKEKWE NINKYFKRMK EKNKRKPQDS KTCPYYHHLE VLYSKKPKRA  300
DVKDFGKELK PEELLLHIME SQSQEERQAQ QQQVQSHSSS EDGEKDDRDQ REGDEEDQNG  360
FQNVMLENSP SRAIMS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0300s00080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028181036.11e-146trihelix transcription factor GT-2-like
SwissprotQ391173e-43TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A371EMQ71e-150A0A371EMQ7_MUCPR; Trihelix transcription factor GT-2
STRINGGLYMA09G19750.21e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-35Trihelix family protein