PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0308s00030.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 615aa    MW: 68927.7 Da    PI: 7.0615
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0308s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.5e-094154521954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Vang0308s00030.1 415 FEHflHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 452
                       554459******************************88 PP
2BELL1041e-33285354372
              BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +e +kkk +Ll++l+eV++rY+qy++q+++vi sFe v glg+a+pY+slA +a+S+hF+cLk+ai++q+
  Vang0308s00030.1 285 NESRKKKCRLLTMLDEVYRRYRQYYQQMHAVITSFEYVSGLGNAAPYASLAINAMSKHFKCLKNAITDQL 354
                       58899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-42217352IPR006563POX domain
PfamPF075267.3E-37222351IPR006563POX domain
PROSITE profilePS5007112.131393456IPR001356Homeobox domain
SMARTSM003893.3E-10396460IPR001356Homeobox domain
CDDcd000861.04E-12396457No hitNo description
SuperFamilySSF466895.99E-17398463IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-28399460IPR009057Homeodomain-like
PfamPF059201.5E-18413452IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
LQLPSPLLLH SLSLFSFFIC NIITNYTNPS LFNFLFFSMA EGFEHYHVPQ QSRRDKLRVF  60
PQNHPSFLES SSILLPTSPN LTSLYDPSLL PSDFLACATQ QPPAAKGEGS NLMMGFLEGG  120
VVNGDAIHVI NSNTNHHHNN PFLYQLQNLR EFGDGYNDAS EMMVFKPEPL SLSLSSQSNN  180
THHPLELNLQ RFGAVIPGLV GRNSEVSRNS VPLGPFTGYA SILKESRFLK PAQQLLEELC  240
DGGVREIYAT EKSLAPDASL MEPPHEGLSA GGVVGGDDPL GDYENESRKK KCRLLTMLDE  300
VYRRYRQYYQ QMHAVITSFE YVSGLGNAAP YASLAINAMS KHFKCLKNAI TDQLQFINKA  360
PFQISNRKDE SPRLHNSDRG TYSQRPGFLE HQQPVWRPQR GLPERAVSVL RAWLFEHFLH  420
PYPTDTDKLM LAKQTGLSRN QVSNWFINAR VRLWKPMVEE IHMLESQQAQ KRPQREEQSR  480
RNLSGGDHLP SDNSLVTENI PSTSMEKFQD APYKQHRNEI ANMQVRGQEQ LNQTNTSNQQ  540
MGVGVSINNG VSLTLGLHQN HGIGLSEPFA MSAAQRFGVA LQPEGYVISG FESQNRHFGR  600
DVIGGGQLLH DFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15402460563Homeobox protein Meis2
3k2a_B1e-15402460563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0308s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419286.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A0S3RV810.0A0A0S3RV81_PHAAN; Uncharacterized protein
STRINGXP_007140461.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-112TALE family protein