PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0308s00210.1
Common NameLR48_Vigan03g149200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 224aa    MW: 25580.8 Da    PI: 5.7675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0308s00210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-17550348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +WT+eEd ll+++++q+G g W++++   g++R++k+c++rw++yl
  Vang0308s00210.1  5 AWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                      7*******************************************97 PP
2Myb_DNA-binding482.8e-1556100147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++  eE e +++++k+lG++ W++Ia +++ gRt++++k++w+ +
  Vang0308s00210.1  56 RGNFADEEVEMIIKLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100
                       89999*****************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.777150IPR017930Myb domain
SMARTSM007175.8E-13252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-21557IPR009057Homeodomain-like
PfamPF002491.1E-15550IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-27597IPR009057Homeodomain-like
CDDcd001673.81E-10550No hitNo description
PROSITE profilePS5129424.23951105IPR017930Myb domain
SMARTSM007177.4E-1555103IPR001005SANT/Myb domain
PfamPF002496.6E-135698IPR001005SANT/Myb domain
CDDcd001674.60E-1058101No hitNo description
Gene3DG3DSA:1.10.10.606.0E-2458105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKKCIQQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIKRGNFA  60
DEEVEMIIKL HKLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKRLNAQEA EDKGGSRDVE  120
VMRPQARNIG SSSVKRRSEG VPPREKAVEQ ESSMSSLTFD ADGQNQVVES QEENIYACLD  180
QQGIVNEYSM DFQLEGFEDV MKGEGSSSQW DWGDLLLDMD LYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21610710110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0308s00210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416639.11e-166PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV97e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0L9U5Q71e-164A0A0L9U5Q7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVG81e-164A0A0S3RVG8_PHAAN; Uncharacterized protein
STRINGXP_007140451.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]