PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0319s00040.1

Common Name

LR48_Vigan07g164500

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 162aa MW: 17806.3 Da PI: 7.5033

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0319s00040.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	47	7.5e-15	15	64	1	49
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkal 49 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+ + l +++a Vang0319s00040.1 15 PCGACKFLRRKCVKSCIFAPYFDSDQgTAHFAAVHKVMNLQAELTYVQAR 64 7*********************9989*******9888777666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.015	14	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-13	15	63	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDYGGKIGGS ERGGPCGACK FLRRKCVKSC IFAPYFDSDQ GTAHFAAVHK VMNLQAELTY 60 VQARLATMQR MPMAVAPLPH PQSSSPQTLP SSDHLASNAE MQSVPMMQYD PLQPHSASLE 120 LSSILFNQSD QQLEDRELQT LAREFVTKYL PGVRFQQSNS P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0319s00040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017430440.1	1e-108	PREDICTED: LOB domain-containing protein 19
TrEMBL	A0A0L9UZ39	1e-106	A0A0L9UZ39_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SY93	1e-106	A0A0S3SY93_PHAAN; Uncharacterized protein
STRING	XP_007134896.1	1e-100	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1771	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	1e-26	LOB domain-containing protein 31

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]