PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0322s00040.1

Common Name

LR48_Vigan464s002100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 362aa MW: 39853.1 Da PI: 5.0931

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0322s00040.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.2	5.4e-31	164	222	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ Vang0322s00040.1 164 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNLLVITYTSEHNHP 222 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-31	157	224	IPR003657	WRKY domain
PROSITE profile	PS50811	33.143	158	224	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	161	224	IPR003657	WRKY domain
SMART	SM00774	4.0E-38	163	223	IPR003657	WRKY domain
Pfam	PF03106	8.2E-26	165	222	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MCNILDPIMD NYQGDLSDII RASGASYGSC SMGTSSSKAC APFSLDHWQF SSVLEGFDGN 60 FGDPFSNTRD PFLHQLELPI SPPNDKLPMS PLVESLSRAL KPSGVVLGDT MINVKTSEDD 120 CLENDVSDSM ILLCNCRKSL AKKSICVPAP AAPNSRQSGE VVPSDLWAWR KYGQKPIKGS 180 PYPRGYYRCS SSKGCPARKQ VERSRTDPNL LVITYTSEHN HPWPTHRNAL AGSSRSQPSS 240 KGNNFGASKN EETSPQNNEE QHEESNSDSN NVNNSACVQE DGEFSDIGLP YKPISNMKSY 300 QQQKQLDQGL FAEFGEIEKA HSLNLMSPPQ GFDDHQMKSN ALDSFHIFDW SADNSTEFHL 360 I*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MCNILDPIMD NYQGDLSDII RASGASYGSC SMGTSSSKAC APFSLDHWQF SSVLEGFDGN  60
FGDPFSNTRD PFLHQLELPI SPPNDKLPMS PLVESLSRAL KPSGVVLGDT MINVKTSEDD  120
CLENDVSDSM ILLCNCRKSL AKKSICVPAP AAPNSRQSGE VVPSDLWAWR KYGQKPIKGS  180
PYPRGYYRCS SSKGCPARKQ VERSRTDPNL LVITYTSEHN HPWPTHRNAL AGSSRSQPSS  240
KGNNFGASKN EETSPQNNEE QHEESNSDSN NVNNSACVQE DGEFSDIGLP YKPISNMKSY  300
QQQKQLDQGL FAEFGEIEKA HSLNLMSPPQ GFDDHQMKSN ALDSFHIFDW SADNSTEFHL  360
I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-23	138	225	2	80	Disease resistance protein RRS1
5w3x_D	1e-23	138	225	2	80	Disease resistance protein RRS1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0322s00040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017408124.1	0.0	PREDICTED: probable WRKY transcription factor 35
TrEMBL	A0A0L9TCE0	0.0	A0A0L9TCE0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R0L9	0.0	A0A0S3R0L9_PHAAN; Uncharacterized protein
STRING	XP_007159024.1	1e-151	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5430	34	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	8e-63	WRKY DNA-binding protein 35

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]