PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0340s00050.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 301aa    MW: 33830.8 Da    PI: 7.5695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0340s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.81.6e-16118173258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                       dD+y+WrKYGqK + + efpr    C+++   gC+++k+v+ ++++p++  itY g H++
  Vang0340s00050.1 118 DDKYAWRKYGQKGILNYEFPR----CSHKhdqGCKATKQVQLEQDNPRTYRITYIGLHTC 173
                       8*******************8....55554559*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182905.62E-17115174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-17116174IPR003657WRKY domain
SMARTSM007745.0E-25117175IPR003657WRKY domain
PROSITE profilePS5081113.712118171IPR003657WRKY domain
PfamPF031061.6E-16118173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEEISKGKKA AIELKILLQK PSGSEPFLSY HQLLASVLTS FTQSLSIIFS SSSQPSSADG  60
LPHRNLLNPT EYSSPVTASG NDPTSGHCSE KRSQKGGRGR YNRCKGAPRK IILSCTTDDK  120
YAWRKYGQKG ILNYEFPRCS HKHDQGCKAT KQVQLEQDNP RTYRITYIGL HTCYDIPKVT  180
HKTTDFSTGE SYLLHSDRSS NVKDDLISSP NLATKPVFPK ETYTSSDLAD HKLLDSSMWL  240
EYWKESEPFN STIMPSRKKF DNSADNAYSC ADIQNLDMDF GGVASVFFDT HFHFDEDQFF  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-15118173968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0340s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022631901.10.0probable WRKY transcription factor 70 isoform X2
TrEMBLA0A0S3RM380.0A0A0S3RM38_PHAAN; Uncharacterized protein
STRINGXP_007141317.11e-143(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.15e-25WRKY DNA-binding protein 54