PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0361s00090.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 130aa    MW: 14213.5 Da    PI: 8.7028
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0361s00090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.71.5e-232974651
                      HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ++ rqvtfskRr+g+ KKA+E+SvLCda+va+i++  +gkl++yss
  Vang0361s00090.1 29 TTSRQVTFSKRRTGLRKKAHEISVLCDAQVALIVLNAKGKLFDYSS 74
                      689*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-19575IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-181838IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.3152776IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-222888IPR002100Transcription factor, MADS-box
PfamPF003192.4E-203072IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-183853IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-185374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MNDIGGIKKQ SNCKHISMLA SACVEADPTT SRQVTFSKRR TGLRKKAHEI SVLCDAQVAL  60
IVLNAKGKLF DYSSESRQTM HCSILNDFLS QPPSCIKSYA EPIGFCLKNI GLWSSSSTAF  120
NVEVPLWIC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0361s00090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150448e-85AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-20AGAMOUS-like 8