PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0370s00240.1
Common NameLR48_Vigan967s000300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 177aa    MW: 20160.9 Da    PI: 7.4608
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0370s00240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.7e-171865148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd++l+++++ +G  +W++ ++  g+ R++k+c++rw +yl
  Vang0370s00240.1 18 RGPWTHEEDQILINYINIYGHSNWRALPKLAGLLRCGKSCRLRWINYL 65
                      89******************************99************97 PP
2Myb_DNA-binding54.23.3e-1771116148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T+eE++ ++ ++++lG++ W++Ia++++ gRt++++k+ w+++l
  Vang0370s00240.1  71 RGNFTPEEEDAIISLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 116
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-25968IPR009057Homeodomain-like
PROSITE profilePS5129416.1051365IPR017930Myb domain
SuperFamilySSF466892.42E-3114112IPR009057Homeodomain-like
SMARTSM007171.0E-131767IPR001005SANT/Myb domain
PfamPF002491.5E-151865IPR001005SANT/Myb domain
CDDcd001671.42E-102065No hitNo description
PROSITE profilePS5129425.76166120IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2769119IPR009057Homeodomain-like
SMARTSM007173.8E-1570118IPR001005SANT/Myb domain
PfamPF002493.3E-1671116IPR001005SANT/Myb domain
CDDcd001679.21E-1173116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
LKQRMGRAPC CEKMGLKRGP WTHEEDQILI NYINIYGHSN WRALPKLAGL LRCGKSCRLR  60
WINYLRPDIK RGNFTPEEED AIISLHEMLG NRWSAIAARL PGRTDNEIKN VWHTHLKKSS  120
GETSGFPSID YGRFEPMSSE EVGVLIDGSS SSMSDGMDFW CNVYARAEEF NQLLEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28161195107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0370s00240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9791361e-136KC979136.1 Glycine max cultivar Jindou 21 MYB4-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411137.13e-81PREDICTED: myb-related protein Myb4
SwissprotQ9SJX82e-76MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A0L9TI396e-80A0A0L9TI39_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RY616e-80A0A0S3RY61_PHAAN; Uncharacterized protein
STRINGXP_007162544.11e-75(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-78myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]