PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0374s00060.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 490aa    MW: 54498.8 Da    PI: 6.9675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0374s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.5e-111241601248
                       HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       l  +v+++G g+W+++ r  g++R++k+c++rw ++l
  Vang0374s00060.1 124 LTYYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHL 160
                       5669*****************************9986 PP
2Myb_DNA-binding51.52.4e-16166209146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++++eE++l+++++ q+G++ W++ a+ ++ gRt++++k++w++
  Vang0374s00060.1 166 KGAFSPEEEKLIIELHSQFGNK-WARMAALLP-GRTDNEIKNYWNT 209
                       799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.44114162IPR001005SANT/Myb domain
CDDcd001671.48E-5123160No hitNo description
SuperFamilySSF466897.03E-24123207IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-17123167IPR009057Homeodomain-like
PROSITE profilePS500907.155124160IPR017877Myb-like domain
PfamPF002497.0E-8127160IPR001005SANT/Myb domain
PROSITE profilePS5129424.882161215IPR017930Myb domain
SMARTSM007175.4E-16165213IPR001005SANT/Myb domain
PfamPF002493.5E-15166209IPR001005SANT/Myb domain
CDDcd001671.01E-11168209No hitNo description
Gene3DG3DSA:1.10.10.602.7E-25168214IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MNTFCNEPGS SHRVSNHTRL RRLEEDCRSR AAATTEGKNG GGSNDRGLAD LERLDGGDLE  60
RAPLAWTLDV VRLDSGCRSV GLWMSFGCTM DVIRLYSGWG RLFLFGYRLD ILASGGREAS  120
LGILTYYVTK HGEGNWNAVQ RNTGLNRCGK SCRLRWANHL RPNLKKGAFS PEEEKLIIEL  180
HSQFGNKWAR MAALLPGRTD NEIKNYWNTR IKRRQRQDQS PLPLSSSSPS SLSFTFQRPE  240
PLLCTPLRFK RYRASSSYNP LPDLPLTTQF PHLDAFRFPV SSGFSPYFQP SFLESDRGIS  300
SSSSFQPKLD LPSSQFYKPP QEQDIKLDID FNDPSFQTGS GLLGGLLLEA QALASGQNSK  360
KRPHLSLNEG NDFFDACQSF EDFPSSSLYW PSSASAAKAK EEAPDLSKFT NEELSSLRTV  420
IPSSNTQGHD WLNNGDPEGL NVQPCDSGMT DDNFGVDLKP VASLFPLTNT TNHNENQGCY  480
PWDNLPGLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2412821422107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0374s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409335.11e-168PREDICTED: uncharacterized protein LOC108321930
TrEMBLA0A0L9TDR41e-160A0A0L9TDR4_PHAAN; Uncharacterized protein
STRINGGLYMA08G42955.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-51myb domain protein 101