PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0380s00160.1
Common NameLR48_Vigan03g196700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 207aa    MW: 22707.8 Da    PI: 8.2913
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0380s00160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.76.9e-37281291101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +CaaCk +r+kC++dC++apyf ++q +  fa+vhk+FGa+n++kll +++e +r++a++sl+yeA+ r+ +Pv+G+v++i++lq+q+++l+ 
  Vang0380s00160.1  28 PCAACKKMRKKCSSDCIFAPYFGSSQgSTLFAAVHKVFGANNLSKLLLEVEEIHRNEAINSLCYEAQTRLANPVHGCVSTISALQRQVASLQG 120
                       7*********************99997899*************************************************************** PP

            DUF260  93 elallkeel 101
                       ela+++++l
  Vang0380s00160.1 121 ELAMVQNQL 129
                       *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.20627129IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-3628126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MANEAEASVE KHKSKVSKCV RSRASSPPCA ACKKMRKKCS SDCIFAPYFG SSQGSTLFAA  60
VHKVFGANNL SKLLLEVEEI HRNEAINSLC YEAQTRLANP VHGCVSTISA LQRQVASLQG  120
ELAMVQNQLI NTQNLYESLL GRTYQQQQAN INVVVQPSAN NVMNMSYFNP GFDHLSMQTA  180
PSTDNMQPLP FSGLPHFNND IPHFFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-302813111113LOB family transfactor Ramosa2.1
5ly0_B1e-302813111113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0380s00160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416704.11e-153PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV32e-42LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0L9U7171e-151A0A0L9U717_PHAAN; Uncharacterized protein
STRINGXP_007162000.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2850733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-44LOB domain-containing protein 20
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]